RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RAB19A4D1S5 217 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 ZFP92A6NM28 416 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 TMEM11P17152 192 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 GUCA2BQ16661 112 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 IL34Q6ZMJ4 242 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 PSMG3Q9BT73 122 aaPredicted RBP13.13□□□□□ -0.31
USP4-201ENST00000265560 NPVFQ9HCQ7 196 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 KIAA1456Q9P272 454 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 GNG13Q9P2W3 67 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 MDKP21741 143 aaPredicted RBP13.13□□□□□ -0.31
USP4-201ENST00000265560 ZP3P21754 424 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 GGTLC1Q9BX51 225 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 F8W036 122 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 AKIRIN2Q53H80 203 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 C2orf83Q53S99 150 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 TMEM41BQ5BJD5 291 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 TEPPQ6URK8 271 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 OR2T10Q8NGZ9 312 aa13.13□□□□□ -0.31
USP4-201ENST00000265560 A0A0U1RQK1 487 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 SERF2P84101 59 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 FXYD3Q14802 87 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 CCDC144NLQ6NUI1 221 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 GATAD1Q8WUU5 269 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 SCRT1Q9BWW7 348 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 SLC39A9Q9NUM3 307 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 DMRT1Q9Y5R6 373 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 PXMP4Q9Y6I8 212 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 TEX22C9J3V5 150 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 NUPL2O15504 423 aaKnown RBP13.12□□□□□ -0.31
USP4-201ENST00000265560 YIF1AO95070 293 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 SFTA3P0C7M3 94 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 DLK1P80370 383 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 NDPQ00604 133 aa13.12□□□□□ -0.31
USP4-201ENST00000265560 A0A1W2PN81 502 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 CHRNA7P36544 502 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 C5orf64Q2M2E5 130 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 BSXQ3C1V8 233 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 MINOS1Q5TGZ0 78 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 NPIPB3Q92617 1050 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 MINOS1-NBL1R4GNA1 71 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 FLNBO75369 2602 aaKnown RBP13.11□□□□□ -0.31
USP4-201ENST00000265560 MAP1LC3B2A6NCE7 125 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 TGFAP01135 160 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 CR1P17927 2039 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 OR10J1P30954 320 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 HABP2Q14520 560 aaPredicted RBP13.11□□□□□ -0.31
USP4-201ENST00000265560 CCDC28AQ8IWP9 274 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 RXFP4Q8TDU9 374 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 RAB24Q969Q5 203 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 MALSU1Q96EH3 234 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 MAP1LC3BQ9GZQ8 125 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 LSM4Q9Y4Z0 139 aaKnown RBP13.11□□□□□ -0.31
USP4-201ENST00000265560 KRBOX1C9JBD0 128 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 CX3CL1P78423 397 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 CD69Q07108 199 aa13.11□□□□□ -0.31
USP4-201ENST00000265560 CD5P06127 495 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 LY6EQ16553 131 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 Q5PR19 223 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 SPATA31B1PQ5VZV4 182 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 SLC16A13Q7RTY0 426 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 STPG3Q8N7X2 389 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 SLC25A33Q9BSK2 321 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 B2MP61769 119 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 ZNF90Q03938 601 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 DEFB113Q30KQ7 82 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 DOK5Q9P104 306 aa13.1□□□□□ -0.31
USP4-201ENST00000265560 IGHV1-69DA0A0B4J2H0 117 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 MDFIC2A0A1B0GVS7 189 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 LINC01548A6NM66 108 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 C17orf112F2Z3M2 114 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 IGHV1-69P01742 117 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 SNRPCP09234 159 aaKnown RBP13.09□□□□□ -0.31
USP4-201ENST00000265560 SEPSECSQ9HD40 501 aaKnown RBP13.09□□□□□ -0.31
USP4-201ENST00000265560 B4DSR2 109 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 LY86O95711 162 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 RND2P52198 227 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 CENPVQ7Z7K6 275 aaPredicted RBP13.09□□□□□ -0.31
USP4-201ENST00000265560 LFNGQ8NES3 379 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 OR5T1Q8NG75 326 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 PSMG3-AS1Q96PY0 264 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 PARD6GQ9BYG4 376 aaPredicted RBP13.09□□□□□ -0.31
USP4-201ENST00000265560 WNT10AQ9GZT5 417 aa13.09□□□□□ -0.31
USP4-201ENST00000265560 RBFOX3A6NFN3 312 aa13.08□□□□□ -0.31
USP4-201ENST00000265560 FAM106CPP0CH98 169 aa13.08□□□□□ -0.31
USP4-201ENST00000265560 HSPB9Q9BQS6 159 aa13.08□□□□□ -0.31
USP4-201ENST00000265560 GGACTQ9BVM4 153 aa13.08□□□□□ -0.31
USP4-201ENST00000265560 LINC00527Q9UJ94 153 aa13.08□□□□□ -0.31
USP4-201ENST00000265560 POLR3KQ9Y2Y1 108 aaPredicted RBP13.08□□□□□ -0.31
USP4-201ENST00000265560 TIMM9Q9Y5J7 89 aa13.08□□□□□ -0.31
USP4-201ENST00000265560 Q96MF0 132 aa13.08□□□□□ -0.32
USP4-201ENST00000265560 C20orf24Q9BUV8 137 aa13.08□□□□□ -0.32
USP4-201ENST00000265560 TNFRSF19Q9NS68 423 aa13.08□□□□□ -0.32
USP4-201ENST00000265560 TBL2Q9Y4P3 447 aaKnown RBP13.08□□□□□ -0.32
USP4-201ENST00000265560 CUBNO60494 3623 aa13.08□□□□□ -0.32
USP4-201ENST00000265560 KIAA0141Q14154 515 aaPredicted RBP13.08□□□□□ -0.32
USP4-201ENST00000265560 UQCC3Q6UW78 93 aa13.08□□□□□ -0.32
USP4-201ENST00000265560 NPBQ8NG41 125 aa13.08□□□□□ -0.32
USP4-201ENST00000265560 SUB1P53999 127 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP4-201ENST00000265560 BTN1A1Q13410 526 aa13.07□□□□□ -0.32
USP4-201ENST00000265560 A0A096LNT2 108 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms