RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 C11orf1Q9H5F2 150 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 ZNF430Q9H8G1 570 aaPredicted RBP7.72□□□□□ -1.17
CLN3-261ENST00000637686 GSKIPQ9P0R6 139 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 ZNF580Q9UK33 172 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 NSG2Q9Y328 171 aa7.72□□□□□ -1.17
CLN3-261ENST00000637686 TRAV41A0A0B4J266 112 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 A0A1W2PN81 502 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 WRBO00258 174 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 TSC22D2O75157 780 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 RBMXL2O75526 392 aaKnown RBP7.71□□□□□ -1.18
CLN3-261ENST00000637686 ACTL6BO94805 426 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 RPLP1P05386 114 aaKnown RBP7.71□□□□□ -1.18
CLN3-261ENST00000637686 PPIFP30405 207 aaKnown RBP7.71□□□□□ -1.18
CLN3-261ENST00000637686 CHRNA7P36544 502 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 P2RY1P47900 373 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 RPL23AP62750 156 aaKnown RBP7.71□□□□□ -1.18
CLN3-261ENST00000637686 GNB1P62873 340 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 PJVKQ0ZLH3 352 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 FOXE3Q13461 319 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 ZNF345Q14585 488 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 FXYD3Q14802 87 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 ECSCRQ19T08 205 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 MRGPRG-AS1Q2M3A8 158 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 CXorf66Q5JRM2 361 aaPredicted RBP7.71□□□□□ -1.18
CLN3-261ENST00000637686 C18orf65Q6ZTR6 163 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 NOXA1Q86UR1 476 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 OR4F17Q8NGA8 305 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 SMIM8Q96KF7 97 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 OR4F4Q96R69 305 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 FAM103A1Q9BTL3 118 aaKnown RBP7.71□□□□□ -1.18
CLN3-261ENST00000637686 RNF126Q9BV68 326 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 QTRT1Q9BXR0 403 aaKnown RBP7.71□□□□□ -1.18
CLN3-261ENST00000637686 NDUFA4L2Q9NRX3 87 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 RCL1Q9Y2P8 373 aaKnown RBP7.71□□□□□ -1.18
CLN3-261ENST00000637686 OR51B2Q9Y5P1 312 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 CMYA5Q8N3K9 4069 aa7.71□□□□□ -1.18
CLN3-261ENST00000637686 TRAV3A0A0B4J244 114 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 CNIH1O95406 144 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 IFNA17P01571 189 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 IGHG4P01861 327 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 ELANEP08246 267 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 PF4V1P10720 104 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 CRIP2P52943 208 aaPredicted RBP7.7□□□□□ -1.18
CLN3-261ENST00000637686 OR2B8PP59922 312 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 RPP30P78346 268 aaKnown RBP7.7□□□□□ -1.18
CLN3-261ENST00000637686 TMEM267Q0VDI3 215 aaPredicted RBP7.7□□□□□ -1.18
CLN3-261ENST00000637686 IZUMO4Q1ZYL8 232 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 LFNGQ8NES3 379 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 GRPEL2Q8TAA5 225 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 ARPC1AQ92747 370 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 WDR89Q96FK6 387 aaPredicted RBP7.7□□□□□ -1.18
CLN3-261ENST00000637686 TMEM68Q96MH6 324 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 AQP10Q96PS8 301 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 KLK15Q9H2R5 256 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 LYRM2Q9NU23 88 aaPredicted RBP7.7□□□□□ -1.18
CLN3-261ENST00000637686 MBD2Q9UBB5 411 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 U3KQ87 197 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 PKD1L1Q8TDX9 2849 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 WNK1Q9H4A3 2382 aa7.7□□□□□ -1.18
CLN3-261ENST00000637686 VWFP04275 2813 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 FBN3Q75N90 2809 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 TEX50A0A1B0GTY4 177 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 NUDT19A8MXV4 375 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 H0YIZ8 118 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 L7N2F9 121 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 SCGB1D2O95969 90 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 IGLV1-40P01703 118 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 C4BPBP20851 252 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 PSMB8P28062 276 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 NUP62P37198 522 aaPredicted RBP7.69□□□□□ -1.18
CLN3-261ENST00000637686 RPL27AP46776 148 aaKnown RBP7.69□□□□□ -1.18
CLN3-261ENST00000637686 S100A10P60903 97 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 POLR2GP62487 172 aaKnown RBP eCLIP7.69□□□□□ -1.18
CLN3-261ENST00000637686 VAMP2P63027 116 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 SSBP2P81877 361 aaPredicted RBP7.69□□□□□ -1.18
CLN3-261ENST00000637686 BAXQ07812 192 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 OR2F1Q13607 317 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 C19orf54Q5BKX5 351 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 UNQ5815/PRO19632Q6UWF5 114 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 C8orf86Q6ZUL3 223 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 ZNF546Q86UE3 836 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 RNF152Q8N8N0 203 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 ZNF114Q8NC26 417 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 KLHL30-AS1Q8NEE0 82 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 DTD1Q8TEA8 209 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 SLC25A31Q9H0C2 315 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 HIPK2Q9H2X6 1198 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 RBKSQ9H477 322 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 PLEKHA3Q9HB20 300 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 ENY2Q9NPA8 101 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 TNFSF18Q9UNG2 199 aa7.69□□□□□ -1.18
CLN3-261ENST00000637686 LSM5Q9Y4Y9 91 aaKnown RBP7.69□□□□□ -1.18
CLN3-261ENST00000637686 A0A0D9SG52 128 aa7.68□□□□□ -1.18
CLN3-261ENST00000637686 CEBPZOSA8MTT3 80 aa7.68□□□□□ -1.18
CLN3-261ENST00000637686 SSSCA1O60232 199 aa7.68□□□□□ -1.18
CLN3-261ENST00000637686 SOX15O60248 233 aa7.68□□□□□ -1.18
CLN3-261ENST00000637686 PF4P02776 101 aa7.68□□□□□ -1.18
CLN3-261ENST00000637686 HNRNPCP07910 306 aaKnown RBP eCLIP7.68□□□□□ -1.18
CLN3-261ENST00000637686 HTR2BP41595 481 aa7.68□□□□□ -1.18
CLN3-261ENST00000637686 PAX9P55771 341 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms