RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ELOVL1Q9BW60 279 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CRIM1Q9NZV1 1036 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 ASCC3Q8N3C0 2202 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 DOCK10Q96BY6 2186 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 HELTA6NFD8 242 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 DEFB108AA8MXU0 73 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 OR7C2O60412 319 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 LILRA1O75019 489 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 IGKV1D-33P01593 117 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 IGKV1-33P01594 117 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 IGLV2-14P01704 120 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 IL6RP08887 468 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 AREGP15514 252 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 DUTP33316 252 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 MPV17P39210 176 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 GNB1P62873 340 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 SUMO1P63165 101 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 SPINK9Q5DT21 86 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 MIC13Q5XKP0 118 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 WDR82Q6UXN9 313 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 C5orf24Q7Z6I8 188 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CXorf67Q86X51 503 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 OR2Z1Q8NG97 314 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 SPXQ9BT56 116 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 MRPL32Q9BYC8 188 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 MRPL18Q9H0U6 180 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 FAM234AQ9H0X4 552 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 GAL3ST2Q9H3Q3 398 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 SERTAD4Q9NUC0 356 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 ELOVL5Q9NYP7 299 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 NAT8BQ9UHF3 227 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 ZZEF1O43149 2961 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 C20orf202A1L168 122 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 FAM181BA6NEQ2 426 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CD55P08174 381 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 IGHV1-2P23083 117 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 TIMP3P35625 211 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 ATP5G3P48201 142 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CEBPDP49716 269 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 YPEL3P61236 119 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 RPS16P62249 146 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 MBNL2Q5VZF2 373 aaKnown RBP3.3□□□□□ -1.88
SCN1A-214ENST00000637038 TEX38Q6PEX7 206 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 STPG3Q8N7X2 389 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 C3orf56Q8N813 242 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 OR4P4Q8NGL7 312 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 OR13A1Q8NGR1 328 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM190Q8WZ59 177 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 GGTLC1Q9BX51 225 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 MS4A5Q9H3V2 200 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 CALYQ9NYX4 217 aa3.3□□□□□ -1.88
SCN1A-214ENST00000637038 IGHV3-64DA0A0J9YX35 117 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF503-AS2A6NEH8 195 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 C15orf61A6NNL5 157 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 SNURFLB1AK76 121 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 C9orf172C9J069 976 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 PSPNO60542 156 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 NPSP0C0P6 89 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 SSTR5P35346 364 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 KLF3P57682 345 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-214ENST00000637038 GAGE1Q13065 139 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 WDR86Q86TI4 376 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 VASH2Q86V25 355 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF664Q8N3J9 261 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 FAM169BQ8N8A8 192 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 STXBP6Q8NFX7 210 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 VSTM2AQ8TAG5 236 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 RNASE8Q8TDE3 154 aaKnown RBP3.29□□□□□ -1.88
SCN1A-214ENST00000637038 C11orf52Q96A22 123 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 COQ2Q96H96 371 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 GNB1LQ9BYB4 327 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 COMMD5Q9GZQ3 224 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 OSTCQ9NRP0 149 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 TMEM106BQ9NUM4 274 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 DUSP13Q9UII6 198 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 FOXA2Q9Y261 457 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-214ENST00000637038 OR51B2Q9Y5P1 312 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 TET2Q6N021 2002 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-214ENST00000637038 hADV38S2A0JD32 116 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 PMS2P5A8MQ11 134 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 AQP7O14520 342 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 AMY1AP04745 511 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 MGST1P10620 155 aaKnown RBP3.29□□□□□ -1.88
SCN1A-214ENST00000637038 RPL31P62899 125 aaKnown RBP3.29□□□□□ -1.88
SCN1A-214ENST00000637038 FOXF2Q12947 444 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 PSG5Q15238 335 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 TREML4Q6UXN2 200 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 C19orf35Q6ZS72 473 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 Q6ZS92 163 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 ZNF826PQ6ZT77 177 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 MMD2Q8IY49 270 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 GATAD1Q8WUU5 269 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 SSMEM1Q8WWF3 244 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 MIEN1Q9BRT3 115 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 FOXJ2Q9P0K8 574 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 SVEP1Q4LDE5 3571 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 FLNBO75369 2602 aaKnown RBP3.29□□□□□ -1.88
SCN1A-214ENST00000637038 SCO2A0A1W2PP80 73 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 F2RL2O00254 374 aa3.29□□□□□ -1.88
SCN1A-214ENST00000637038 WNT9BO14905 357 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms