RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 LYPD6BQ8NI32 183 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 TMEM170AQ8WVE7 144 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 SRSF12Q8WXF0 261 aaKnown RBP8.45□□□□□ -1.06
CLN3-248ENST00000636355 FOXC2Q99958 501 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 HINT2Q9BX68 163 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 MEGF9Q9H1U4 602 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 FBXL15Q9H469 300 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 C7orf69Q9H7B7 122 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 RAB19A4D1S5 217 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 CGB1A6NKQ9 187 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 CYB5BO43169 146 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 IGHV4-31P0DP07 118 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 GPX4P36969 197 aaPredicted RBP8.44□□□□□ -1.06
CLN3-248ENST00000636355 RAB31Q13636 194 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 HES1Q14469 280 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 TMEM249Q2WGJ8 235 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 AKR1C8PQ5T2L2 129 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 ETFRF1Q6IPR1 90 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 UQCC3Q6UW78 93 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 ZNF562Q6V9R5 426 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 C9orf139Q6ZV77 190 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 C16orf82Q7Z2V1 217 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 DYNAPQ8N1N2 210 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 ZNF709Q8N972 641 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 OR1P1Q8NH06 330 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 NPCDR1Q9BY65 106 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 SH3BGRL3Q9H299 93 aa8.44□□□□□ -1.06
CLN3-248ENST00000636355 LSM4Q9Y4Z0 139 aaKnown RBP8.44□□□□□ -1.06
CLN3-248ENST00000636355 TEX22C9J3V5 150 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 TEX46H3BTG2 121 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 M0QZK8 103 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 PLXNB1O43157 2135 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 FSHBP01225 129 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 FGF7P21781 194 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 CNTFRP26992 372 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 SSBP2P81877 361 aaPredicted RBP8.43□□□□□ -1.06
CLN3-248ENST00000636355 WT1-ASQ06250 92 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 PJVKQ0ZLH3 352 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 TUSC1Q2TAM9 212 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 C10orf55Q5SWW7 151 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 PXDC1Q5TGL8 231 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 COMMD7Q86VX2 200 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 C22orf15Q8WYQ4 148 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 RITA1Q96K30 269 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 Q96MF0 132 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 NPVFQ9HCQ7 196 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 PITPNC1Q9UKF7 332 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 MYO9AB2RTY4 2548 aa8.43□□□□□ -1.06
CLN3-248ENST00000636355 TEX15Q9BXT5 2789 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 TRAV1-1A0A0B4J248 108 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 A0A1B0GW64 132 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 A0A1W2PRD5 423 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 A0A1W2PRF3 423 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 A0A1W2PRM7 423 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 MFSD2BA6NFX1 497 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 NPIPB5A8MRT5 1133 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 RNF223E7ERA6 249 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 HBE1P02100 147 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 PRH1P02810 166 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 OR13C7P0DN81 318 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 OPRK1P41145 380 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 CAMLGP49069 296 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 RUNX1Q01196 453 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 AKR1C1Q04828 323 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 CD69Q07108 199 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 TMEM41BQ5BJD5 291 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 TEPPQ6URK8 271 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 BTNL8Q6UX41 500 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 TREML4Q6UXN2 200 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 TMEM182Q6ZP80 229 aaPredicted RBP8.42□□□□□ -1.06
CLN3-248ENST00000636355 Q6ZRG5 221 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 SLC16A13Q7RTY0 426 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 TMEM144Q7Z5S9 345 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 OR10W1Q8NGF6 305 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 ARPC1AQ92747 370 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 SLC35E1Q96K37 410 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 TMEM68Q96MH6 324 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 P2RX4Q99571 388 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 MOB4Q9Y3A3 225 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 FAM96BQ9Y3D0 163 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 F11RQ9Y624 299 aaKnown RBP8.42□□□□□ -1.06
CLN3-248ENST00000636355 TEP1Q99973 2627 aaKnown RBP8.42□□□□□ -1.06
CLN3-248ENST00000636355 ITPR3Q14573 2671 aa8.42□□□□□ -1.06
CLN3-248ENST00000636355 CNIH1O95406 144 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 IGHV4-38-2P0DP08 117 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 MYOD1P15172 320 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 RAB2AP61019 212 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 FXYD3Q14802 87 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 ARSJQ5FYB0 599 aaPredicted RBP8.41□□□□□ -1.06
CLN3-248ENST00000636355 SLC7A5P1Q8MH63 180 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 Q8N9W7 124 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 C17orf50Q8WW18 174 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 CXorf58Q96LI9 332 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 RBM14Q96PK6 669 aaKnown RBP8.41□□□□□ -1.06
CLN3-248ENST00000636355 RSG1Q9BU20 258 aa8.41□□□□□ -1.06
CLN3-248ENST00000636355 A0A0U1RQK1 487 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 E7EUB6 86 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 TGFAP01135 160 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 OPN1MWP04001 364 aa8.4□□□□□ -1.06
CLN3-248ENST00000636355 CRYGCP07315 174 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms