RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 HLA-AP01891 365 aaKnown RBP13.77□□□□□ -0.21
CLN3-247ENST00000636351 CTRB1P17538 263 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 ANXA7P20073 488 aaKnown RBP13.77□□□□□ -0.21
CLN3-247ENST00000636351 HOXA1P49639 335 aaPredicted RBP13.77□□□□□ -0.21
CLN3-247ENST00000636351 UBE2MP61081 183 aaKnown RBP13.77□□□□□ -0.21
CLN3-247ENST00000636351 C4orf46Q504U0 113 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 SPINK9Q5DT21 86 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 CTRB2Q6GPI1 263 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 FAM223AQ8IWN6 122 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 DPF1Q92782 380 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 USMG5Q96IX5 58 aa13.77□□□□□ -0.21
CLN3-247ENST00000636351 A0A0B4J2A0 478 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 FAM240BA0A1B0GVZ2 78 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 I3L521 148 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 CYB5BO43169 146 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 ST8SIA3O43173 380 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 BRI3O95415 125 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 CRYGCP07315 174 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 HSPE1P61604 102 aaKnown RBP13.76□□□□□ -0.21
CLN3-247ENST00000636351 PRCDQ00LT1 54 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 RUNX1Q01196 453 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 ATP5G2Q06055 141 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 ZNF616Q08AN1 781 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 ASAH1Q13510 395 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 EXOSC2Q13868 293 aaKnown RBP13.76□□□□□ -0.21
CLN3-247ENST00000636351 ANKRD55Q3KP44 614 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 LYZL2Q7Z4W2 148 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 OR11H1Q8NG94 326 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 OR1N2Q8NGR9 330 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 GPR146Q96CH1 333 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 GPR61Q9BZJ8 451 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 SHPKQ9UHJ6 478 aa13.76□□□□□ -0.21
CLN3-247ENST00000636351 TRAV6A0A075B6T7 132 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 ANKRD34BA5PLL1 514 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 TCRBP04435 133 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 HIST1H1BP16401 226 aaKnown RBP13.75□□□□□ -0.21
CLN3-247ENST00000636351 WT1-ASQ06250 92 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 C15orf32Q32M92 178 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 ZNF429Q86V71 674 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 NECAP1Q8NC96 275 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 ENKURQ8TC29 256 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 WWC2-AS2Q96NR7 200 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 P2RX4Q99571 388 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 B9D2Q9BPU9 175 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 ENY2Q9NPA8 101 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.75□□□□□ -0.21
CLN3-247ENST00000636351 NUDT15Q9NV35 164 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 FBXL7Q9UJT9 491 aa13.75□□□□□ -0.21
CLN3-247ENST00000636351 TRBV9A0A0B4J1U6 114 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 C9orf170A2RU37 121 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 NXPH3O95157 252 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 OR4E1P0C645 316 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 OR8U8P0C7N1 319 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 SULT1A3P0DMM9 295 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 SULT1A4P0DMN0 295 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 Q6ZRM9 215 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 COQ8AQ8NI60 647 aa13.74□□□□□ -0.21
CLN3-247ENST00000636351 IGHV4OR15-8A0A075B7B6 117 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 A0A087WW49 117 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 DUXBA0A1W2PPF3 345 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 LINC01619G3V211 115 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 DEFA1P59665 94 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 DEFA3P59666 94 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 ERHP84090 104 aaKnown RBP13.73□□□□□ -0.21
CLN3-247ENST00000636351 DHRS2Q13268 280 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 SLC25A24Q6NUK1 477 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 LYG2Q86SG7 212 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 FANCD2OSQ96PS1 177 aa13.73□□□□□ -0.21
CLN3-247ENST00000636351 F11RQ9Y624 299 aaKnown RBP13.73□□□□□ -0.21
CLN3-247ENST00000636351 IGLV11-55A0A075B6I3 123 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 NDUFB8O95169 186 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 HSPB1P04792 205 aaKnown RBP13.72□□□□□ -0.21
CLN3-247ENST00000636351 H2AFB2P0C5Z0 115 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 IFITM3Q01628 133 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 FHL3Q13643 280 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 SMCO1Q147U7 214 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 NMSQ5H8A3 153 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 OR2C3Q8N628 320 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 OR1S1Q8NH92 325 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 MCRIP2Q9BUT9 160 aaKnown RBP13.72□□□□□ -0.21
CLN3-247ENST00000636351 THYN1Q9P016 225 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 S4R3C0 116 aa13.72□□□□□ -0.21
CLN3-247ENST00000636351 CEBPZOSA8MTT3 80 aa13.71□□□□□ -0.21
CLN3-247ENST00000636351 IGHV3-23P01764 117 aa13.71□□□□□ -0.21
CLN3-247ENST00000636351 HOXB5P09067 269 aa13.71□□□□□ -0.21
CLN3-247ENST00000636351 SLURP1P55000 103 aa13.71□□□□□ -0.21
CLN3-247ENST00000636351 SPCS3P61009 180 aa13.71□□□□□ -0.21
CLN3-247ENST00000636351 ZNF343Q6P1L6 599 aa13.71□□□□□ -0.21
CLN3-247ENST00000636351 LRTM2Q8N967 370 aa13.71□□□□□ -0.21
CLN3-247ENST00000636351 EEF1AKMT3Q96AZ1 226 aa13.71□□□□□ -0.21
CLN3-247ENST00000636351 RANGRFQ9HD47 186 aaPredicted RBP13.71□□□□□ -0.21
CLN3-247ENST00000636351 PEF1Q9UBV8 284 aaKnown RBP13.71□□□□□ -0.21
CLN3-247ENST00000636351 SNCAP37840 140 aa13.7□□□□□ -0.22
CLN3-247ENST00000636351 DCTN2Q13561 401 aaKnown RBP13.7□□□□□ -0.22
CLN3-247ENST00000636351 OR52B4Q8NGK2 314 aa13.7□□□□□ -0.22
CLN3-247ENST00000636351 OR1L6Q8NGR2 347 aa13.7□□□□□ -0.22
CLN3-247ENST00000636351 OR52E5Q8NH55 327 aa13.7□□□□□ -0.22
CLN3-247ENST00000636351 MISP3Q96FF7 219 aa13.7□□□□□ -0.22
CLN3-247ENST00000636351 CXorf58Q96LI9 332 aa13.7□□□□□ -0.22
CLN3-247ENST00000636351 CACFD1Q9UGQ2 172 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms