RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 FMC1Q96HJ9 113 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 HIST1H4GQ99525 98 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 PTPRFP10586 1907 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 KLRD1Q13241 179 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 GGNQ86UU5 652 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 TMEM219Q86XT9 240 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 OR10AG1Q8NH19 301 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 TRAF4Q9BUZ4 470 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-219ENST00000620786 PARLQ9H300 379 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 A0A1B0GTI1 187 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 CD33P20138 364 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 SRIP30626 198 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 OR11H4Q8NGC9 324 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 MUC21A0A0G2JKD1 596 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 MUC21A0A140T8X8 626 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 MUC21Q5SSG8 566 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 PSMG3Q9BT73 122 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-219ENST00000620786 PLSCR2Q9NRY7 297 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF256Q9Y2P7 627 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-219ENST00000620786 TRAV41A0A0B4J266 112 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 TDGF1P13385 188 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 FAM209BQ5JX69 171 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 FAM71F2Q6NXP2 309 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF383Q8NA42 475 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 TET1Q8NFU7 2136 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 NINQ8N4C6 2090 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 SCN2AQ99250 2005 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 LOC107984156A0A0G2JMH3 177 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 PEX7O00628 323 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 DUSP14O95147 198 aaKnown RBP9.49□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF250P15622 560 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 ZP1P60852 638 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 HBBP68871 147 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 C2orf68Q2NKX9 166 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF660Q6AZW8 331 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-219ENST00000620786 ARL17AQ8IVW1 177 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 Q9H3A6 140 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 TGIF2-C20orf24A0A0A6YYL0 155 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 CA7P43166 264 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 H2BFSP57053 126 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 LEMD1Q68G75 181 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 CFAP161Q6P656 301 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 TMEM70Q9BUB7 260 aa9.49□□□□□ -0.89
CLIP1-219ENST00000620786 OTOFQ9HC10 1997 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 SIGLEC5O15389 551 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 CD7P09564 240 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 GATA2P23769 480 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-219ENST00000620786 OTX1P32242 354 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-219ENST00000620786 OR5AN1Q8NGI8 311 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 CACNG8Q8WXS5 425 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 COL25A1Q9BXS0 654 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-219ENST00000620786 OR9G9P0C7N8 305 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 DANCRP0C864 163 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 SRD5A1P18405 259 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 CHD5Q8TDI0 1954 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 IGHV2-26A0A0B4J1V2 119 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 EGR1P18146 543 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 MALP21145 153 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 A0A087X0M5 115 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 TRBV6-7A0A0A0MS04 114 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 A0A1B0GX30 115 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 GPX4P36969 197 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-219ENST00000620786 KIAA1644Q3SXP7 199 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 SPATA45Q537H7 98 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 PVRIGQ6DKI7 326 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 MIR17HGQ75NE6 70 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 REC114Q7Z4M0 266 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 MDS2Q8NDY4 140 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 LCTP09848 1927 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 PIKFYVEQ9Y2I7 2098 aa9.48□□□□□ -0.89
CLIP1-219ENST00000620786 GRIFINA4D1Z8 144 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 TRGC2P03986 189 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 IFITM3Q01628 133 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 BRD3OSQ6XYD6 125 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 BRWD1Q9NSI6 2320 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 CRIM1Q9NZV1 1036 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 C15orf61A6NNL5 157 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 UCP1P25874 307 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 IFT22Q9H7X7 185 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 FOXG1P55316 489 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-219ENST00000620786 PAX8Q06710 450 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 TMEM170BQ5T4T1 132 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 LINC01356Q8N9X3 169 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 CCDC88CQ9P219 2028 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 HINT1P49773 126 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-219ENST00000620786 FHITP49789 147 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF600Q6ZNG1 722 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 GTF3AQ92664 365 aaKnown RBP9.47□□□□□ -0.89
CLIP1-219ENST00000620786 SLC50A1Q9BRV3 221 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 TOMM7Q9P0U1 55 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 SLC25A15Q9Y619 301 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 SELENOKQ9Y6D0 94 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 TRGV4A0A0C4DH28 118 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 LINC00271P0C7V0 271 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 SLC25A16P16260 332 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 C17orf82Q86X59 251 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-219ENST00000620786 C3orf56Q8N813 242 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 TNFRSF14Q92956 283 aa9.47□□□□□ -0.89
CLIP1-219ENST00000620786 TMEM178BH3BS89 294 aa9.46□□□□□ -0.89
CLIP1-219ENST00000620786 IGFBP3P17936 291 aaPredicted RBP9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms