RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 LOC102723996A0A087X1L8 192 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 TRAV2A0A0B4J234 112 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 CYSLTR1Q9Y271 337 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 SCN9AQ15858 1988 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 LGALS3P17931 250 aaKnown RBP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 SRSF6Q13247 344 aaKnown RBP4.25□□□□□ -1.73
VPS13D-214ENST00000620676 SPSB3Q6PJ21 355 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 ZBTB34Q8NCN2 500 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 KIAA1217Q5T5P2 1943 aa4.25□□□□□ -1.73
VPS13D-214ENST00000620676 WDR31Q8NA23 367 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 SSC4DQ8WTU2 575 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 RNF183Q96D59 192 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 LYPD3O95274 346 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 TNFRSF6BO95407 300 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 LGALS4P56470 323 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 MESP2Q0VG99 397 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 ANKRD39Q53RE8 183 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 SARAFQ96BY9 339 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 SIGLEC12Q96PQ1 595 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 MAP1LC3AQ9H492 121 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 ATAD5Q96QE3 1844 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 THAP10Q9P2Z0 257 aaPredicted RBP4.24□□□□□ -1.73
VPS13D-214ENST00000620676 SPANXN1Q5VSR9 72 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 MRPS17Q9Y2R5 130 aaKnown RBP4.24□□□□□ -1.73
VPS13D-214ENST00000620676 TRBV20OR9-2A0A075B6H5 130 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 PSMB11A5LHX3 300 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 RNF186Q9NXI6 227 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 TRBV24-1A0A075B6N3 115 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 A8MWV9 139 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 CD5LO43866 347 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 COX19Q49B96 90 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 MPDZO75970 2070 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 TMEM238LA0A1B0GVL6 79 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 A6NJY4 79 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 WFDC2Q14508 124 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 SYT8Q8NBV8 401 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 RASL10BQ96S79 203 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 RREB1Q92766 1687 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 IGHV3OR16-13A0A075B7E8 117 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 IGHV3-74A0A0B4J1X5 117 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 SPINK14Q6IE38 97 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 LYZL4Q96KX0 146 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 WNT9BO14905 357 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 WDR82Q6UXN9 313 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 OR4X2Q8NGF9 303 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 WBP1Q96G27 269 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 SLC25A33Q9BSK2 321 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 DOCK10Q96BY6 2186 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 PEX7O00628 323 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 DXOO77932 396 aaKnown RBP4.24□□□□□ -1.73
VPS13D-214ENST00000620676 ANKRD33Q7Z3H0 272 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 SIVA1O15304 175 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 NDUFB8O95169 186 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 S100A7L2Q5SY68 101 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 TIMD4Q96H15 378 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 TMEM262E9PQX1 116 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 CTGFP29279 349 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 PHF7Q9BWX1 381 aaPredicted RBP4.24□□□□□ -1.73
VPS13D-214ENST00000620676 CCL11P51671 97 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 CFAP161Q6P656 301 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 HARBI1Q96MB7 349 aa4.24□□□□□ -1.73
VPS13D-214ENST00000620676 LRRC30A6NM36 301 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 TMEM250H0YL14 139 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 DLX6P56179 175 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 C9orf40Q8IXQ3 194 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 CHD3Q12873 2000 aaKnown RBP4.23□□□□□ -1.73
VPS13D-214ENST00000620676 ARAP2Q8WZ64 1704 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 ARFGEF1Q9Y6D6 1849 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 TRGV10A0A0A0MS01 117 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 IFITM1P13164 125 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 RPL30P62888 115 aaKnown RBP4.23□□□□□ -1.73
VPS13D-214ENST00000620676 SPEM2Q0P670 501 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 CSRP2Q16527 193 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 GNB1LQ9BYB4 327 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 IGHV2-70DA0A0C4DH43 119 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 OR11H12B2RN74 326 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 TGFBR3LH3BV60 316 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 RPP25LQ8N5L8 163 aaKnown RBP4.23□□□□□ -1.73
VPS13D-214ENST00000620676 OR11H1Q8NG94 326 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 OR11H2Q8NH07 326 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 TMEM242Q9NWH2 141 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 NRXN3Q9Y4C0 1643 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 ZNF716A6NP11 495 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 NRN1LQ496H8 165 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 TMEM170BQ5T4T1 132 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 NBASA2RRP1 2371 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 TEX48A0A1B0GUV7 120 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 NPIPB11E5RHQ5 1161 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 SSBP2P81877 361 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-214ENST00000620676 POLEQ07864 2286 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 TRBV6-7A0A0A0MS04 114 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-214ENST00000620676 ZADH2Q8N4Q0 377 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 KCNK17Q96T54 332 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 CELA2AP08217 269 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 RPS19BP1Q86WX3 136 aaKnown RBP4.23□□□□□ -1.73
VPS13D-214ENST00000620676 DRAM1Q8N682 238 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 NUP35Q8NFH5 326 aa4.23□□□□□ -1.73
VPS13D-214ENST00000620676 SIPA1L3O60292 1781 aaPredicted RBP4.23□□□□□ -1.73
VPS13D-214ENST00000620676 IGKV3OR2-268A0A0C4DH90 116 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms