RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 HSPE1P61604 102 aaKnown RBP10.34□□□□□ -0.75
LINC00540-202ENST00000616974 PRCDQ00LT1 54 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 BEAN1Q3B7T3 259 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 ZNF343Q6P1L6 599 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 RNASE11Q8TAA1 199 aaKnown RBP10.34□□□□□ -0.75
LINC00540-202ENST00000616974 LSM10Q969L4 123 aaKnown RBP10.34□□□□□ -0.75
LINC00540-202ENST00000616974 TMEM68Q96MH6 324 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 CCDC32Q9BV29 185 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 C20orf85Q9H1P6 137 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 LINC01619G3V211 115 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 H3BUA1 57 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 UPK1BO75841 260 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 MECP2P51608 486 aaKnown RBP10.34□□□□□ -0.75
LINC00540-202ENST00000616974 DHRS2Q13268 280 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 OR5B3Q8NH48 314 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 TMEM170AQ8WVE7 144 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 RRNAD1Q96FB5 475 aaKnown RBP10.34□□□□□ -0.75
LINC00540-202ENST00000616974 NUDT15Q9NV35 164 aa10.34□□□□□ -0.75
LINC00540-202ENST00000616974 C9orf170A2RU37 121 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 F8W735 103 aaPredicted RBP10.33□□□□□ -0.76
LINC00540-202ENST00000616974 SFT2D2O95562 160 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 TCRBP04435 133 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 HOXB5P09067 269 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 OR4E1P0C645 316 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 MLANAQ16655 118 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 CLEC19AQ6UXS0 136 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 LINC00299Q6ZSB3 139 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 ZNF429Q86V71 674 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 DEDD2Q8WXF8 326 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 S100ZQ8WXG8 99 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 ZNF414Q96IQ9 312 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 TSC22D3Q99576 134 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 MRPL36Q9P0J6 103 aaKnown RBP10.33□□□□□ -0.76
LINC00540-202ENST00000616974 F11RQ9Y624 299 aaKnown RBP10.33□□□□□ -0.76
LINC00540-202ENST00000616974 NAP1L6A6NFF2 107 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 K7EIM0 57 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 BRI3O95415 125 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 IFNA17P01571 189 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 ATP5G2Q06055 141 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 ZNF846Q147U1 533 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 SLC25A24Q6NUK1 477 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 CADM3Q8N126 398 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 OR2C3Q8N628 320 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 NECAP1Q8NC96 275 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 SCGB3A2Q96PL1 93 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 SEC22CQ9BRL7 303 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 KCNIP3Q9Y2W7 256 aa10.33□□□□□ -0.76
LINC00540-202ENST00000616974 SYNJ2BPP57105 145 aa10.32□□□□□ -0.76
LINC00540-202ENST00000616974 PEF1Q9UBV8 284 aaKnown RBP10.32□□□□□ -0.76
LINC00540-202ENST00000616974 IGHV3OR16-8A0A075B7F1 116 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 A0A0B4J2A0 478 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 HSPB1P04792 205 aaKnown RBP10.31□□□□□ -0.76
LINC00540-202ENST00000616974 FGF2P09038 288 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 NRARPQ7Z6K4 114 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 DPF1Q92782 380 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 SHPKQ9UHJ6 478 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 A0A0G2JLM5 398 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 FAM223BA6NKX1 122 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 OR2C1O95371 312 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 SPNP16150 400 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 GPR183P32249 361 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 ASAH1Q13510 395 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 KLK9Q2XQG4 91 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 AARDQ4LEZ3 155 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 FAM223AQ8IWN6 122 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 SCARB1Q8WTV0 552 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 PINX1Q96BK5 328 aaKnown RBP10.31□□□□□ -0.76
LINC00540-202ENST00000616974 MISP3Q96FF7 219 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 C7orf50Q9BRJ6 194 aaKnown RBP10.31□□□□□ -0.76
LINC00540-202ENST00000616974 WDR12Q9GZL7 423 aaKnown RBP10.31□□□□□ -0.76
LINC00540-202ENST00000616974 PLEKHA3Q9HB20 300 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 KLK9Q9UKQ9 250 aa10.31□□□□□ -0.76
LINC00540-202ENST00000616974 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.3□□□□□ -0.76
LINC00540-202ENST00000616974 OR2T8A6NH00 312 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 CENPXA8MT69 81 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 SEC14L6B5MCN3 397 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 CCSO14618 274 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 CLEC3BP05452 202 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 RNASE2P10153 161 aaKnown RBP10.3□□□□□ -0.76
LINC00540-202ENST00000616974 C4orf46Q504U0 113 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 IL34Q6ZMJ4 242 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 ADAMTSL5Q6ZMM2 481 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 LGI3Q8N145 548 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 ZNF502Q8TBZ5 544 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 USMG5Q96IX5 58 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 CHRDL1Q9BU40 450 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 FNDC4Q9H6D8 234 aaPredicted RBP10.3□□□□□ -0.76
LINC00540-202ENST00000616974 FKBP11Q9NYL4 201 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 OVOL1O14753 267 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 B3GALNT1O75752 331 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 OR8U8P0C7N1 319 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 ADMP35318 185 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 HOXA1P49639 335 aaPredicted RBP10.3□□□□□ -0.76
LINC00540-202ENST00000616974 KLF5Q13887 457 aaPredicted RBP10.3□□□□□ -0.76
LINC00540-202ENST00000616974 GGNBP1Q5YKI7 109 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 UNQ9165/PRO28630Q6UXU0 137 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 LYG2Q86SG7 212 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 UBAC2Q8NBM4 344 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 CACNG8Q8WXS5 425 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 IL22RA2Q969J5 263 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms