RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 OR8U8P0C7N1 319 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 OR13C7P0DN81 318 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 AREGP15514 252 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 ATP5IP56385 69 aaPredicted RBP11.31□□□□□ -0.6
USP39-220ENST00000613444 CX3CL1P78423 397 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 ERHP84090 104 aaKnown RBP11.31□□□□□ -0.6
USP39-220ENST00000613444 VWC2Q2TAL6 325 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 TUSC1Q2TAM9 212 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 TMEM219Q86XT9 240 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 C22orf15Q8WYQ4 148 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 PINX1Q96BK5 328 aaKnown RBP11.31□□□□□ -0.6
USP39-220ENST00000613444 PLA2G2EQ9NZK7 142 aa11.31□□□□□ -0.6
USP39-220ENST00000613444 IGHV7-81A0A0B4J1V7 117 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 A6NDX4 124 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 H3BUX3 64 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 HLA-DRB1P01911 266 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 AMY1AP04745 511 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 EIF5AP63241 154 aaKnown RBP11.3□□□□□ -0.6
USP39-220ENST00000613444 FXYD3Q14802 87 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 PVRIGQ6DKI7 326 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 C5orf56Q8N8D9 126 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 P2RX4Q99571 388 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 FLNBO75369 2602 aaKnown RBP11.3□□□□□ -0.6
USP39-220ENST00000613444 RPS10-NUDT3A0A1W2PQS6 291 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 REG1AP05451 166 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 APELAP0DMC3 54 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 MDKP21741 143 aaPredicted RBP11.3□□□□□ -0.6
USP39-220ENST00000613444 RAB11AP62491 216 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 ATP6V1FQ16864 119 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 FAM74A1Q5RGS3 127 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 LILRB2Q8N423 598 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 ZNF114Q8NC26 417 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 TMED6Q8WW62 240 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 SRSF8Q9BRL6 282 aaKnown RBP11.3□□□□□ -0.6
USP39-220ENST00000613444 SLC25A33Q9BSK2 321 aa11.3□□□□□ -0.6
USP39-220ENST00000613444 CD5LO43866 347 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 SCAF4O95104 1147 aaKnown RBP11.29□□□□□ -0.6
USP39-220ENST00000613444 CNIH1O95406 144 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 IFNA4P05014 189 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 SPP1P10451 314 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 EGR2P11161 476 aaPredicted RBP11.29□□□□□ -0.6
USP39-220ENST00000613444 SNCAP37840 140 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 HSD17B11Q8NBQ5 300 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 SSMEM1Q8WWF3 244 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 HSPB9Q9BQS6 159 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 TMEM147Q9BVK8 224 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 SH3BGRL3Q9H299 93 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 FBXO7Q9Y3I1 522 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 RFNGQ9Y644 331 aa11.29□□□□□ -0.6
USP39-220ENST00000613444 FBXO24O75426 580 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 ATP6V0CP27449 155 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 MFAP2P55001 183 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 ASPHD1Q5U4P2 390 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 C19orf35Q6ZS72 473 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 ZNF48Q96MX3 618 aaPredicted RBP11.28□□□□□ -0.6
USP39-220ENST00000613444 FAM103A1Q9BTL3 118 aaKnown RBP11.28□□□□□ -0.6
USP39-220ENST00000613444 GGACTQ9BVM4 153 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 PARD6GQ9BYG4 376 aaPredicted RBP11.28□□□□□ -0.6
USP39-220ENST00000613444 MOB4Q9Y3A3 225 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 FGF16O43320 207 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 DLK1P80370 383 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 RUNX1Q01196 453 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 ARSJQ5FYB0 599 aaPredicted RBP11.28□□□□□ -0.6
USP39-220ENST00000613444 HSD17B13Q7Z5P4 300 aaPredicted RBP11.28□□□□□ -0.6
USP39-220ENST00000613444 ARPC1AQ92747 370 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 RASL11BQ9BPW5 248 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 WDR61Q9GZS3 305 aaKnown RBP11.28□□□□□ -0.6
USP39-220ENST00000613444 PRDM13Q9H4Q3 707 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 UQCC1Q9NVA1 299 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 DMRT1Q9Y5R6 373 aa11.28□□□□□ -0.6
USP39-220ENST00000613444 UBE2L5PA0A1B0GUS4 154 aa11.27□□□□□ -0.6
USP39-220ENST00000613444 SEC11BP0C7V7 166 aa11.27□□□□□ -0.6
USP39-220ENST00000613444 FAM157CP0CG43 387 aa11.27□□□□□ -0.6
USP39-220ENST00000613444 IER3P46695 156 aa11.27□□□□□ -0.6
USP39-220ENST00000613444 LY6EQ16553 131 aa11.27□□□□□ -0.6
USP39-220ENST00000613444 PCNPQ8WW12 178 aaKnown RBP11.27□□□□□ -0.6
USP39-220ENST00000613444 SLC25A32Q9H2D1 315 aa11.27□□□□□ -0.6
USP39-220ENST00000613444 SH2D7A6NKC9 451 aaPredicted RBP11.27□□□□□ -0.61
USP39-220ENST00000613444 IFNA5P01569 189 aa11.27□□□□□ -0.61
USP39-220ENST00000613444 IGHV4-59P01825 116 aa11.27□□□□□ -0.61
USP39-220ENST00000613444 CTRB1P17538 263 aa11.27□□□□□ -0.61
USP39-220ENST00000613444 CTRB2Q6GPI1 263 aa11.27□□□□□ -0.61
USP39-220ENST00000613444 MRPL41Q8IXM3 137 aaKnown RBP11.27□□□□□ -0.61
USP39-220ENST00000613444 NMBP08949 121 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 MLANAQ16655 118 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 Q6YL49 198 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 IL17RELQ6ZVW7 336 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 OR1P1Q8NH06 330 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 TAF15Q92804 592 aaKnown RBP eCLIP11.26□□□□□ -0.61
USP39-220ENST00000613444 FNDC4Q9H6D8 234 aaPredicted RBP11.26□□□□□ -0.61
USP39-220ENST00000613444 WDR83OSQ9Y284 106 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 F11RQ9Y624 299 aaKnown RBP11.26□□□□□ -0.61
USP39-220ENST00000613444 BAHCC1Q9P281 2608 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 LINC01548A6NM66 108 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 CRYGCP07315 174 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 CD69Q07108 199 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 CLLU1Q5K131 121 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 EIF5AL1Q6IS14 154 aaKnown RBP11.26□□□□□ -0.61
USP39-220ENST00000613444 TREML4Q6UXN2 200 aa11.26□□□□□ -0.61
USP39-220ENST00000613444 RNASEH2CQ8TDP1 164 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms