RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 F11RQ9Y624 299 aaKnown RBP12.91□□□□□ -0.34
TRIM28-215ENST00000601150 S4R3C0 116 aa12.91□□□□□ -0.34
TRIM28-215ENST00000601150 TRBV7-1A0A0A6YYK4 115 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 A0A0B4J293 547 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 WI2-2373I1.2A0A1W2PRP0 233 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 IGHV3-23P01764 117 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 BAK1Q16611 211 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 TMEM268Q5VZI3 342 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 SLC25A24Q6NUK1 477 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 CLEC19AQ6UXS0 136 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 SELENOHQ8IZQ5 122 aaKnown RBP12.9□□□□□ -0.34
TRIM28-215ENST00000601150 OR9G4Q8NGQ1 327 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 OR1L6Q8NGR2 347 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 GALNT14Q96FL9 552 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 CCDC140Q96MF4 163 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 SLC25A21Q9BQT8 299 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-215ENST00000601150 PLEKHA3Q9HB20 300 aa12.9□□□□□ -0.34
TRIM28-215ENST00000601150 A0A0G2JRQ6 117 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 MFSD2BA6NFX1 497 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 PPP5D1E7EU14 171 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 K7EIL1 84 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 ST8SIA3O43173 380 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 GGCTO75223 188 aaKnown RBP12.89□□□□□ -0.35
TRIM28-215ENST00000601150 MFAP2P55001 183 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 TMEM187Q14656 261 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 TMED4Q7Z7H5 227 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 OR2C3Q8N628 320 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 VN1R17PQ8TDU5 208 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 IL22RA2Q969J5 263 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 SDHCQ99643 169 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-215ENST00000601150 PDCD10Q9BUL8 212 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 TMEM56-RWDD3S4R434 201 aa12.89□□□□□ -0.35
TRIM28-215ENST00000601150 A6NHS1 94 aa12.88□□□□□ -0.35
TRIM28-215ENST00000601150 IFNA17P01571 189 aa12.88□□□□□ -0.35
TRIM28-215ENST00000601150 ANXA3P12429 323 aa12.88□□□□□ -0.35
TRIM28-215ENST00000601150 ARL3P36405 182 aa12.88□□□□□ -0.35
TRIM28-215ENST00000601150 SUPT4H1P63272 117 aaKnown RBP12.88□□□□□ -0.35
TRIM28-215ENST00000601150 ERHP84090 104 aaKnown RBP12.88□□□□□ -0.35
TRIM28-215ENST00000601150 SLC35G3Q8N808 338 aa12.88□□□□□ -0.35
TRIM28-215ENST00000601150 OR1P1Q8NH06 330 aa12.88□□□□□ -0.35
TRIM28-215ENST00000601150 ZNF502Q8TBZ5 544 aa12.88□□□□□ -0.35
TRIM28-215ENST00000601150 NAP1L6A6NFF2 107 aa12.87□□□□□ -0.35
TRIM28-215ENST00000601150 SRPXP78539 464 aa12.87□□□□□ -0.35
TRIM28-215ENST00000601150 SPINK9Q5DT21 86 aa12.87□□□□□ -0.35
TRIM28-215ENST00000601150 Q6ZRM9 215 aa12.87□□□□□ -0.35
TRIM28-215ENST00000601150 ZNF114Q8NC26 417 aa12.87□□□□□ -0.35
TRIM28-215ENST00000601150 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-215ENST00000601150 PEMTQ9UBM1 199 aa12.87□□□□□ -0.35
TRIM28-215ENST00000601150 ZNF256Q9Y2P7 627 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-215ENST00000601150 INS-IGF2F8WCM5 200 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 OR2C1O95371 312 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 HLA-AP01891 365 aaKnown RBP12.86□□□□□ -0.35
TRIM28-215ENST00000601150 CLEC3BP05452 202 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 IL7P13232 177 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 RBMS2Q15434 407 aaKnown RBP12.86□□□□□ -0.35
TRIM28-215ENST00000601150 CNPY1Q3B7I2 92 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 TMEM128Q5BJH2 165 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 IL34Q6ZMJ4 242 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 GPR146Q96CH1 333 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 PRR25Q96S07 402 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 PRR13Q9NZ81 148 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 CACNG5Q9UF02 275 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 DNAH3Q8TD57 4116 aa12.86□□□□□ -0.35
TRIM28-215ENST00000601150 PIGBOS1A0A0B4J2F0 54 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 LINC00854A0A1B0GVQ3 168 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 CENPXA8MT69 81 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 LY86O95711 162 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 GPR183P32249 361 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 HOXA1P49639 335 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-215ENST00000601150 CCR6P51684 374 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 SPCS3P61009 180 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 DCTN2Q13561 401 aaKnown RBP12.85□□□□□ -0.35
TRIM28-215ENST00000601150 AARDQ4LEZ3 155 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 DEFB121Q5J5C9 76 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 LINC00299Q6ZSB3 139 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 GPHB5Q86YW7 130 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 LGI3Q8N145 548 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 CENPSQ8N2Z9 138 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 ATP6V0BQ99437 205 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 C7orf50Q9BRJ6 194 aaKnown RBP12.85□□□□□ -0.35
TRIM28-215ENST00000601150 ENY2Q9NPA8 101 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 SIGLEC8Q9NYZ4 499 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 SORL1Q92673 2214 aa12.85□□□□□ -0.35
TRIM28-215ENST00000601150 A0A0B4J2A0 478 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 K7EIM0 57 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 LGALS9O00182 355 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 IGLV1-51P01701 117 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 CSN3P07498 182 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 VAMP1P23763 118 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 SNCAP37840 140 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 FAM106AQ4KMX7 169 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 PLET1Q6UQ28 207 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 OR52E5Q8NH55 327 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 SCARB1Q8WTV0 552 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 MISP3Q96FF7 219 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 C21orf62Q9NYP8 219 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 SHPKQ9UHJ6 478 aa12.84□□□□□ -0.35
TRIM28-215ENST00000601150 TGP01266 2768 aa12.83□□□□□ -0.36
TRIM28-215ENST00000601150 IGHV3-21A0A0B4J1V1 117 aa12.83□□□□□ -0.36
TRIM28-215ENST00000601150 NDUFB6O95139 128 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms