RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 RNF222A6NCQ9 220 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 E5RGE8 158 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 FCN1O00602 326 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 MED6O75586 246 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 CA2P00918 260 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 CXCL2P19875 107 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 CD33P20138 364 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 PVALBP20472 110 aaPredicted RBP9.97□□□□□ -0.81
UPF1-208ENST00000600012 VDAC2P45880 294 aaPredicted RBP9.97□□□□□ -0.81
UPF1-208ENST00000600012 HOXA1P49639 335 aaPredicted RBP9.97□□□□□ -0.81
UPF1-208ENST00000600012 AP2S1P53680 142 aaPredicted RBP9.97□□□□□ -0.81
UPF1-208ENST00000600012 PAX9P55771 341 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 SPCS3P61009 180 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 HSPE1P61604 102 aaKnown RBP9.97□□□□□ -0.81
UPF1-208ENST00000600012 C5orf64Q2M2E5 130 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 LAMTOR1Q6IAA8 161 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 PPP1R27Q86WC6 154 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 OR52E5Q8NH55 327 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 DTD1Q8TEA8 209 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 SLC25A33Q9BSK2 321 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 COMMD5Q9GZQ3 224 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 BOLA1Q9Y3E2 137 aa9.97□□□□□ -0.81
UPF1-208ENST00000600012 FAM24AA6NFZ4 105 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 CGB1A6NKQ9 187 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 HMSDA8MTL9 139 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 E7EUB6 86 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 FGF2P09038 288 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 RPL27AP46776 148 aaKnown RBP9.96□□□□□ -0.82
UPF1-208ENST00000600012 P2RY1P47900 373 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 CAV2P51636 162 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 SSBP2P81877 361 aaPredicted RBP9.96□□□□□ -0.82
UPF1-208ENST00000600012 PRCDQ00LT1 54 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 LGALSLQ3ZCW2 172 aaPredicted RBP9.96□□□□□ -0.82
UPF1-208ENST00000600012 TMEM65Q6PI78 240 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 Q8N9W7 124 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 WFDC9Q8NEX5 89 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 OR1L8Q8NGR8 309 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 RAB40CQ96S21 281 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 MFFQ9GZY8 342 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 FKBP11Q9NYL4 201 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 PSENENQ9NZ42 101 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 ZNF257Q9Y2Q1 563 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 HSPB11Q9Y547 144 aa9.96□□□□□ -0.82
UPF1-208ENST00000600012 A0A1B0GW64 132 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 IGSF23A1L1A6 192 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 SH2D7A6NKC9 451 aaPredicted RBP9.95□□□□□ -0.82
UPF1-208ENST00000600012 PF4V1P10720 104 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 IGLL1P15814 213 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 RPL23AP62750 156 aaKnown RBP9.95□□□□□ -0.82
UPF1-208ENST00000600012 BLCAPP62952 87 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 TMEM267Q0VDI3 215 aaPredicted RBP9.95□□□□□ -0.82
UPF1-208ENST00000600012 TMEM95Q3KNT9 176 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 Q6ZS46 218 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 INO80EQ8NBZ0 244 aaPredicted RBP9.95□□□□□ -0.82
UPF1-208ENST00000600012 OR5AU1Q8NGC0 362 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 OR10W1Q8NGF6 305 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 OR8H1Q8NGG4 311 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 OR5B3Q8NH48 314 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 SMIM8Q96KF7 97 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 RBM14Q96PK6 669 aaKnown RBP9.95□□□□□ -0.82
UPF1-208ENST00000600012 OR4C12Q96R67 309 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 PLEKHA3Q9HB20 300 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 HEYLQ9NQ87 328 aaPredicted RBP9.95□□□□□ -0.82
UPF1-208ENST00000600012 NDUFA4L2Q9NRX3 87 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 MOB4Q9Y3A3 225 aa9.95□□□□□ -0.82
UPF1-208ENST00000600012 DNAH3Q8TD57 4116 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 A0A1W2PRX2 142 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 ACTL6BO94805 426 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 RPL12P30050 165 aaKnown RBP9.94□□□□□ -0.82
UPF1-208ENST00000600012 MAS1LP35410 378 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 NUP62P37198 522 aaPredicted RBP9.94□□□□□ -0.82
UPF1-208ENST00000600012 SPANXN5Q5MJ07 72 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 ACOT7LQ6ZUV0 252 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 C16orf82Q7Z2V1 217 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 OR2C3Q8N628 320 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 C5orf56Q8N8D9 126 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 BSCL2Q96G97 398 aaPredicted RBP9.94□□□□□ -0.82
UPF1-208ENST00000600012 AQP10Q96PS8 301 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 RASL11BQ9BPW5 248 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 ENY2Q9NPA8 101 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 ZC4H2Q9NQZ6 224 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 LYRM2Q9NU23 88 aaPredicted RBP9.94□□□□□ -0.82
UPF1-208ENST00000600012 PAIP2BQ9ULR5 123 aaKnown RBP9.94□□□□□ -0.82
UPF1-208ENST00000600012 WSB1Q9Y6I7 421 aa9.94□□□□□ -0.82
UPF1-208ENST00000600012 TSC22D2O75157 780 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 CNIH1O95406 144 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 PF4P02776 101 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 APELAP0DMC3 54 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 TAS2R30P59541 319 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 NDPQ00604 133 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 EWSR1Q01844 656 aaKnown RBP eCLIP9.93□□□□□ -0.82
UPF1-208ENST00000600012 OR2F1Q13607 317 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 TMUB2Q71RG4 321 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 KCNRGQ8N5I3 272 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 TMEM252Q8N6L7 170 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 SRSF12Q8WXF0 261 aaKnown RBP9.93□□□□□ -0.82
UPF1-208ENST00000600012 CIB3Q96Q77 187 aaPredicted RBP9.93□□□□□ -0.82
UPF1-208ENST00000600012 HSPB9Q9BQS6 159 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 ARL6Q9H0F7 186 aa9.93□□□□□ -0.82
UPF1-208ENST00000600012 HIPK2Q9H2X6 1198 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms