RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TMEM187Q14656 261 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 RPEL1Q2QD12 228 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 CNPY1Q3B7I2 92 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 FAM219AQ8IW50 185 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 SELENOHQ8IZQ5 122 aaKnown RBP11.16□□□□□ -0.62
VRK3-206ENST00000594090 EEF1AKMT3Q96AZ1 226 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 SLC25A21Q9BQT8 299 aaPredicted RBP11.16□□□□□ -0.62
VRK3-206ENST00000594090 THYN1Q9P016 225 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 KCNIP3Q9Y2W7 256 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 TMEM56-RWDD3S4R434 201 aa11.16□□□□□ -0.62
VRK3-206ENST00000594090 PPP5D1E7EU14 171 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 SAP30O75446 220 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 IL7P13232 177 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 MFAP2P55001 183 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 SYNJ2BPP57105 145 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 RBMS2Q15434 407 aaKnown RBP11.15□□□□□ -0.62
VRK3-206ENST00000594090 TMEM268Q5VZI3 342 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 TMED4Q7Z7H5 227 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 CXorf58Q96LI9 332 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 PLEKHA3Q9HB20 300 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 PRR13Q9NZ81 148 aa11.15□□□□□ -0.62
VRK3-206ENST00000594090 ZMAT5Q9UDW3 170 aaKnown RBP11.15□□□□□ -0.62
VRK3-206ENST00000594090 TRBV7-1A0A0A6YYK4 115 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 NAP1L6A6NFF2 107 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 CCR6P51684 374 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 TMEM128Q5BJH2 165 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 SPINK9Q5DT21 86 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 SLC25A24Q6NUK1 477 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 CLEC19AQ6UXS0 136 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 Q6ZRM9 215 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 OR2C3Q8N628 320 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 SLC35G3Q8N808 338 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 ZNF114Q8NC26 417 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 MRAPQ8TCY5 172 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 IL22RA2Q969J5 263 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 PDCD10Q9BUL8 212 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 ELOVL1Q9BW60 279 aa11.14□□□□□ -0.63
VRK3-206ENST00000594090 LINC00854A0A1B0GVQ3 168 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 WI2-2373I1.2A0A1W2PRP0 233 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 IFNA17P01571 189 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 ANXA3P12429 323 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 AARDQ4LEZ3 155 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 LINC00299Q6ZSB3 139 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 OR9G4Q8NGQ1 327 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 OR1L6Q8NGR2 347 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 OR1P1Q8NH06 330 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 ZNF502Q8TBZ5 544 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 VN1R17PQ8TDU5 208 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 GPR146Q96CH1 333 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 DNAH3Q8TD57 4116 aa11.13□□□□□ -0.63
VRK3-206ENST00000594090 K7EIL1 84 aa11.12□□□□□ -0.63
VRK3-206ENST00000594090 GGCTO75223 188 aaKnown RBP11.12□□□□□ -0.63
VRK3-206ENST00000594090 HLA-AP01891 365 aaKnown RBP11.12□□□□□ -0.63
VRK3-206ENST00000594090 BTCP35070 178 aa11.12□□□□□ -0.63
VRK3-206ENST00000594090 ARL3P36405 182 aa11.12□□□□□ -0.63
VRK3-206ENST00000594090 SRPXP78539 464 aa11.12□□□□□ -0.63
VRK3-206ENST00000594090 ERHP84090 104 aaKnown RBP11.12□□□□□ -0.63
VRK3-206ENST00000594090 TATDN3Q17R31 274 aa11.12□□□□□ -0.63
VRK3-206ENST00000594090 OR4C12Q96R67 309 aa11.12□□□□□ -0.63
VRK3-206ENST00000594090 C7orf50Q9BRJ6 194 aaKnown RBP11.12□□□□□ -0.63
VRK3-206ENST00000594090 CACNG5Q9UF02 275 aa11.12□□□□□ -0.63
VRK3-206ENST00000594090 PRKDCP78527 4128 aaKnown RBP11.11□□□□□ -0.63
VRK3-206ENST00000594090 INS-IGF2F8WCM5 200 aa11.11□□□□□ -0.63
VRK3-206ENST00000594090 NDUFB6O95139 128 aa11.11□□□□□ -0.63
VRK3-206ENST00000594090 GPR183P32249 361 aa11.11□□□□□ -0.63
VRK3-206ENST00000594090 HOXA1P49639 335 aaPredicted RBP11.11□□□□□ -0.63
VRK3-206ENST00000594090 LGI3Q8N145 548 aa11.11□□□□□ -0.63
VRK3-206ENST00000594090 CENPSQ8N2Z9 138 aa11.11□□□□□ -0.63
VRK3-206ENST00000594090 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.11□□□□□ -0.63
VRK3-206ENST00000594090 PTTG2Q9NZH5 202 aa11.11□□□□□ -0.63
VRK3-206ENST00000594090 A0A0B4J2A0 478 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 CENPXA8MT69 81 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 K7EIM0 57 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 OR2C1O95371 312 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 VAMP1P23763 118 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 PPP1R1AQ13522 171 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 NMSQ5H8A3 153 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 IL34Q6ZMJ4 242 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 LYZL2Q7Z4W2 148 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 OR52E5Q8NH55 327 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 S100ZQ8WXG8 99 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 MISP3Q96FF7 219 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 PRR25Q96S07 402 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 CCDC32Q9BV29 185 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 ZC4H2Q9NQZ6 224 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 PEMTQ9UBM1 199 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 SHPKQ9UHJ6 478 aa11.1□□□□□ -0.63
VRK3-206ENST00000594090 ZNF256Q9Y2P7 627 aaPredicted RBP11.1□□□□□ -0.63
VRK3-206ENST00000594090 IGHV3-21A0A0B4J1V1 117 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 PIGBOS1A0A0B4J2F0 54 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 TGOLN2O43493 480 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 SFT2D2O95562 160 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 CLEC3BP05452 202 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 CSN3P07498 182 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 SULT1A3P0DMM9 295 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 SULT1A4P0DMN0 295 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 SPCS3P61009 180 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 HAPLN4Q86UW8 402 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 GPHB5Q86YW7 130 aa11.09□□□□□ -0.63
VRK3-206ENST00000594090 SCARB1Q8WTV0 552 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms