RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 TATDN3Q17R31 274 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 SPINK9Q5DT21 86 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 SLC25A24Q6NUK1 477 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 ZNF502Q8TBZ5 544 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 GLYATL2Q8WU03 294 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 TMEM230Q96A57 120 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 CXorf58Q96LI9 332 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 TMEM222Q9H0R3 208 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 ZC4H2Q9NQZ6 224 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 TRBV7-1A0A0A6YYK4 115 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 IGHV3-21A0A0B4J1V1 117 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 A0A0B4J293 547 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 B3GALNT1O75752 331 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 GP9P14770 177 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 EDN2P20800 178 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 GPR183P32249 361 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 ETV6P41212 452 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 HSPE1P61604 102 aaKnown RBP11.95□□□□□ -0.5
LIG3-215ENST00000592690 TOMM5Q8N4H5 51 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 OR2C3Q8N628 320 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 SRRQ9GZT4 340 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 THYN1Q9P016 225 aa11.95□□□□□ -0.5
LIG3-215ENST00000592690 CYB5BO43169 146 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 ST8SIA3O43173 380 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 ATG12O94817 140 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 CDS2O95674 445 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 CLEC3BP05452 202 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 DCTN2Q13561 401 aaKnown RBP11.94□□□□□ -0.5
LIG3-215ENST00000592690 SPANXN2Q5MJ10 180 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 ADAMTSL5Q6ZMM2 481 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 RNASE11Q8TAA1 199 aaKnown RBP11.94□□□□□ -0.5
LIG3-215ENST00000592690 VN1R17PQ8TDU5 208 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 B9D2Q9BPU9 175 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 PEMTQ9UBM1 199 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 DNAH9Q9NYC9 4486 aa11.94□□□□□ -0.5
LIG3-215ENST00000592690 K7EIM0 57 aa11.93□□□□□ -0.5
LIG3-215ENST00000592690 FAUP35544 74 aaKnown RBP11.93□□□□□ -0.5
LIG3-215ENST00000592690 AP3S2P59780 193 aa11.93□□□□□ -0.5
LIG3-215ENST00000592690 Q6ZRM9 215 aa11.93□□□□□ -0.5
LIG3-215ENST00000592690 GPHB5Q86YW7 130 aa11.93□□□□□ -0.5
LIG3-215ENST00000592690 SELENOHQ8IZQ5 122 aaKnown RBP11.93□□□□□ -0.5
LIG3-215ENST00000592690 OR1P1Q8NH06 330 aa11.93□□□□□ -0.5
LIG3-215ENST00000592690 RBPMSQ93062 196 aaKnown RBP11.93□□□□□ -0.5
LIG3-215ENST00000592690 RRNAD1Q96FB5 475 aaKnown RBP11.93□□□□□ -0.5
LIG3-215ENST00000592690 PLEKHA3Q9HB20 300 aa11.93□□□□□ -0.5
LIG3-215ENST00000592690 SIGLEC8Q9NYZ4 499 aa11.93□□□□□ -0.5
LIG3-215ENST00000592690 PRR13Q9NZ81 148 aa11.93□□□□□ -0.5
LIG3-215ENST00000592690 IZUMO1RA6ND01 250 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 F8W735 103 aaPredicted RBP11.92□□□□□ -0.5
LIG3-215ENST00000592690 LGALS9O00182 355 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 DHODHQ02127 395 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 CD69Q07108 199 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 TMEM268Q5VZI3 342 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 SGPP2Q8IWX5 399 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 SLC35G3Q8N808 338 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 ZNF114Q8NC26 417 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 SCARB1Q8WTV0 552 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 CACNG8Q8WXS5 425 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 SCGB3A2Q96PL1 93 aa11.92□□□□□ -0.5
LIG3-215ENST00000592690 IGHV3-35A0A0C4DH35 117 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 OR2T8A6NH00 312 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 C2orf70A6NJV1 201 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 TGOLN2O43493 480 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 IFNA17P01571 189 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 AKR1C4P17516 323 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 SUPT4H1P63272 117 aaKnown RBP11.91□□□□□ -0.5
LIG3-215ENST00000592690 TMEM187Q14656 261 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 BAK1Q16611 211 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 PLET1Q6UQ28 207 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 OR1L6Q8NGR2 347 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 MISP3Q96FF7 219 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 GALNT14Q96FL9 552 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 SDHCQ99643 169 aaPredicted RBP11.91□□□□□ -0.5
LIG3-215ENST00000592690 C21orf62Q9NYP8 219 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 NDUFA13Q9P0J0 144 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 TMEM56-RWDD3S4R434 201 aa11.91□□□□□ -0.5
LIG3-215ENST00000592690 ZNF320A2RRD8 509 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 TMEM213A2RRL7 107 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 A8MWP6 167 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 I3L2K1 104 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 FOLR2P14207 255 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 ERHP84090 104 aaKnown RBP11.9□□□□□ -0.5
LIG3-215ENST00000592690 FAM106AQ4KMX7 169 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 ZNF57Q68EA5 555 aaPredicted RBP11.9□□□□□ -0.5
LIG3-215ENST00000592690 C11orf87Q6NUJ2 197 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 UNQ9165/PRO28630Q6UXU0 137 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 FAM219AQ8IW50 185 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 GPR146Q96CH1 333 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 PDCD10Q9BUL8 212 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 SELENOKQ9Y6D0 94 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 SMAD5-AS1Q9Y6J3 95 aa11.9□□□□□ -0.5
LIG3-215ENST00000592690 IGHV3-48P01763 117 aa11.89□□□□□ -0.51
LIG3-215ENST00000592690 HOXA1P49639 335 aaPredicted RBP11.89□□□□□ -0.51
LIG3-215ENST00000592690 CD300EQ496F6 205 aaPredicted RBP11.89□□□□□ -0.51
LIG3-215ENST00000592690 AARDQ4LEZ3 155 aa11.89□□□□□ -0.51
LIG3-215ENST00000592690 LCN12Q6JVE5 192 aa11.89□□□□□ -0.51
LIG3-215ENST00000592690 TMED4Q7Z7H5 227 aa11.89□□□□□ -0.51
LIG3-215ENST00000592690 UBAC2Q8NBM4 344 aa11.89□□□□□ -0.51
LIG3-215ENST00000592690 DYNLRB2Q8TF09 96 aa11.89□□□□□ -0.51
LIG3-215ENST00000592690 DEDD2Q8WXF8 326 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms