RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ZNF256Q9Y2P7 627 aaPredicted RBP15.33■□□□□ 0.04
SS18-218ENST00000581021 OR2C1O95371 312 aa15.32■□□□□ 0.04
SS18-218ENST00000581021 CSN3P07498 182 aa15.32■□□□□ 0.04
SS18-218ENST00000581021 SPNP16150 400 aa15.32■□□□□ 0.04
SS18-218ENST00000581021 HSPE1P61604 102 aaKnown RBP15.32■□□□□ 0.04
SS18-218ENST00000581021 SELENOHQ8IZQ5 122 aaKnown RBP15.32■□□□□ 0.04
SS18-218ENST00000581021 EEF1AKMT3Q96AZ1 226 aa15.32■□□□□ 0.04
SS18-218ENST00000581021 ZC4H2Q9NQZ6 224 aa15.32■□□□□ 0.04
SS18-218ENST00000581021 NDUFA13Q9P0J0 144 aa15.32■□□□□ 0.04
SS18-218ENST00000581021 IGHV3-21A0A0B4J1V1 117 aa15.31■□□□□ 0.04
SS18-218ENST00000581021 ST8SIA3O43173 380 aa15.31■□□□□ 0.04
SS18-218ENST00000581021 B3GALNT1O75752 331 aa15.31■□□□□ 0.04
SS18-218ENST00000581021 IGLV1-51P01701 117 aa15.31■□□□□ 0.04
SS18-218ENST00000581021 MECP2P51608 486 aaKnown RBP15.31■□□□□ 0.04
SS18-218ENST00000581021 OR2C3Q8N628 320 aa15.31■□□□□ 0.04
SS18-218ENST00000581021 OR4C12Q96R67 309 aa15.31■□□□□ 0.04
SS18-218ENST00000581021 LSM4Q9Y4Z0 139 aaKnown RBP15.31■□□□□ 0.04
SS18-218ENST00000581021 F8W735 103 aaPredicted RBP15.3■□□□□ 0.04
SS18-218ENST00000581021 K7EIM0 57 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 GGCTO75223 188 aaKnown RBP15.3■□□□□ 0.04
SS18-218ENST00000581021 GPR183P32249 361 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 ARL3P36405 182 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 AP3S2P59780 193 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 COL7A1Q02388 2944 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 TMEM187Q14656 261 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 SLC25A24Q6NUK1 477 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 SORL1Q92673 2214 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 GALNT14Q96FL9 552 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 TMEM56Q96MV1 263 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 ELOVL1Q9BW60 279 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 TMEM56-RWDD3S4R434 201 aa15.3■□□□□ 0.04
SS18-218ENST00000581021 CLEC3BP05452 202 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 AKR1C4P17516 323 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 FAUP35544 74 aaKnown RBP15.29■□□□□ 0.04
SS18-218ENST00000581021 AARDQ4LEZ3 155 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 DEFB121Q5J5C9 76 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 TMEM268Q5VZI3 342 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 ZNF114Q8NC26 417 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 OR1P1Q8NH06 330 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 VN1R17PQ8TDU5 208 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 RBPMSQ93062 196 aaKnown RBP15.29■□□□□ 0.04
SS18-218ENST00000581021 CXorf58Q96LI9 332 aa15.29■□□□□ 0.04
SS18-218ENST00000581021 ZMAT5Q9UDW3 170 aaKnown RBP15.29■□□□□ 0.04
SS18-218ENST00000581021 TRBV7-1A0A0A6YYK4 115 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 LY86O95711 162 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 DHODHQ02127 395 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 FAM209BQ5JX69 171 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 SGPP2Q8IWX5 399 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 SCARB1Q8WTV0 552 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 GPR146Q96CH1 333 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 RRNAD1Q96FB5 475 aaKnown RBP15.28■□□□□ 0.04
SS18-218ENST00000581021 ZNF414Q96IQ9 312 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 PLEKHA3Q9HB20 300 aa15.28■□□□□ 0.04
SS18-218ENST00000581021 ATG12O94817 140 aa15.27■□□□□ 0.04
SS18-218ENST00000581021 GP9P14770 177 aa15.27■□□□□ 0.04
SS18-218ENST00000581021 ZNF57Q68EA5 555 aaPredicted RBP15.27■□□□□ 0.04
SS18-218ENST00000581021 C11orf87Q6NUJ2 197 aa15.27■□□□□ 0.04
SS18-218ENST00000581021 UNQ9165/PRO28630Q6UXU0 137 aa15.27■□□□□ 0.04
SS18-218ENST00000581021 TMED4Q7Z7H5 227 aa15.27■□□□□ 0.04
SS18-218ENST00000581021 SLC35G3Q8N808 338 aa15.27■□□□□ 0.04
SS18-218ENST00000581021 RNASE11Q8TAA1 199 aaKnown RBP15.27■□□□□ 0.04
SS18-218ENST00000581021 THYN1Q9P016 225 aa15.27■□□□□ 0.04
SS18-218ENST00000581021 CACNG5Q9UF02 275 aa15.27■□□□□ 0.04
SS18-218ENST00000581021 IGHV3-35A0A0C4DH35 117 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 IZUMO1RA6ND01 250 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 I3L2K1 104 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 CCR6P51684 374 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 GPHB5Q86YW7 130 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 DEDD2Q8WXF8 326 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 CACNG8Q8WXS5 425 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 SCGB3A2Q96PL1 93 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 SIGLEC8Q9NYZ4 499 aa15.26■□□□□ 0.03
SS18-218ENST00000581021 TMEM213A2RRL7 107 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 OR2T8A6NH00 312 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 C2orf70A6NJV1 201 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 INS-IGF2F8WCM5 200 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 LGALS9O00182 355 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 TGOLN2O43493 480 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 IFNA17P01571 189 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 IGHV3-48P01763 117 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 BTCP35070 178 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 ADMP35318 185 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 TATDN3Q17R31 274 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 FAM219AQ8IW50 185 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 MISP3Q96FF7 219 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 CHRDL1Q9BU40 450 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 C21orf62Q9NYP8 219 aa15.25■□□□□ 0.03
SS18-218ENST00000581021 LINC00854A0A1B0GVQ3 168 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 A6NHS1 94 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 CYB5BO43169 146 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 IL7P13232 177 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 NMSQ5H8A3 153 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 TRIQKQ629K1 86 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 PVRIGQ6DKI7 326 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 LYZL2Q7Z4W2 148 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 IL22RA2Q969J5 263 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 PEMTQ9UBM1 199 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 SELENOKQ9Y6D0 94 aa15.24■□□□□ 0.03
SS18-218ENST00000581021 A8MWP6 167 aa15.23■□□□□ 0.03
SS18-218ENST00000581021 MT-CO2P00403 227 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms