RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ARL6Q9H0F7 186 aa19.82■□□□□ 0.76
SHMT1-207ENST00000580002 ZC4H2Q9NQZ6 224 aa19.82■□□□□ 0.76
SHMT1-207ENST00000580002 LINC00527Q9UJ94 153 aa19.82■□□□□ 0.76
SHMT1-207ENST00000580002 VPREB3Q9UKI3 123 aa19.82■□□□□ 0.76
SHMT1-207ENST00000580002 PMS2P5A8MQ11 134 aa19.81■□□□□ 0.76
SHMT1-207ENST00000580002 PARP11Q9NR21 331 aa19.81■□□□□ 0.76
SHMT1-207ENST00000580002 STRAPQ9Y3F4 350 aaKnown RBP19.81■□□□□ 0.76
SHMT1-207ENST00000580002 ATP6V0E1O15342 81 aa19.8■□□□□ 0.76
SHMT1-207ENST00000580002 RNASE2P10153 161 aaKnown RBP19.8■□□□□ 0.76
SHMT1-207ENST00000580002 SRD5A1P18405 259 aa19.8■□□□□ 0.76
SHMT1-207ENST00000580002 MFAP2P55001 183 aa19.8■□□□□ 0.76
SHMT1-207ENST00000580002 OR8G2PQ6IF36 304 aa19.8■□□□□ 0.76
SHMT1-207ENST00000580002 LFNGQ8NES3 379 aa19.8■□□□□ 0.76
SHMT1-207ENST00000580002 NSD1Q96L73 2696 aaPredicted RBP19.8■□□□□ 0.76
SHMT1-207ENST00000580002 NUP62P37198 522 aaPredicted RBP19.8■□□□□ 0.76
SHMT1-207ENST00000580002 OR2F1Q13607 317 aa19.8■□□□□ 0.76
SHMT1-207ENST00000580002 SLC24A4Q8NFF2 622 aa19.8■□□□□ 0.76
SHMT1-207ENST00000580002 P2RX4Q99571 388 aa19.8■□□□□ 0.76
SHMT1-207ENST00000580002 A0A1W2PN81 502 aa19.79■□□□□ 0.76
SHMT1-207ENST00000580002 BTBD17A6NE02 478 aa19.79■□□□□ 0.76
SHMT1-207ENST00000580002 CHRNA7P36544 502 aa19.79■□□□□ 0.76
SHMT1-207ENST00000580002 MLANAQ16655 118 aa19.79■□□□□ 0.76
SHMT1-207ENST00000580002 BSXQ3C1V8 233 aa19.79■□□□□ 0.76
SHMT1-207ENST00000580002 FBXL17Q9UF56 701 aa19.79■□□□□ 0.76
SHMT1-207ENST00000580002 CACFD1Q9UGQ2 172 aa19.79■□□□□ 0.76
SHMT1-207ENST00000580002 DMRT1Q9Y5R6 373 aa19.79■□□□□ 0.76
SHMT1-207ENST00000580002 G3V318 75 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 PRH1P02810 166 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 S100A11P31949 105 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 OPCMLQ14982 345 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 CDC42EP3Q9UKI2 254 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 U3KQ87 197 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 DNAJC9-AS1A6NH13 148 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 INS-IGF2F8WCM5 200 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 NPY1RP25929 384 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 SULT1A1P50225 295 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 ERHP84090 104 aaKnown RBP19.78■□□□□ 0.76
SHMT1-207ENST00000580002 ZNF345Q14585 488 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 CLINT1Q14677 625 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 SLC25A31Q9H0C2 315 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 CYTL1Q9NRR1 136 aa19.78■□□□□ 0.76
SHMT1-207ENST00000580002 TMEM95Q3KNT9 176 aa19.77■□□□□ 0.76
SHMT1-207ENST00000580002 OR5T1Q8NG75 326 aa19.77■□□□□ 0.76
SHMT1-207ENST00000580002 OR5C1Q8NGR4 320 aa19.77■□□□□ 0.76
SHMT1-207ENST00000580002 A0A0D9SG52 128 aa19.76■□□□□ 0.75
SHMT1-207ENST00000580002 SNCAP37840 140 aa19.76■□□□□ 0.75
SHMT1-207ENST00000580002 C16orf82Q7Z2V1 217 aa19.76■□□□□ 0.75
SHMT1-207ENST00000580002 NOL4LQ96MY1 436 aaPredicted RBP19.76■□□□□ 0.75
SHMT1-207ENST00000580002 NF1P21359 2839 aa19.76■□□□□ 0.75
SHMT1-207ENST00000580002 HTR2BP41595 481 aa19.75■□□□□ 0.75
SHMT1-207ENST00000580002 ECSCRQ19T08 205 aa19.75■□□□□ 0.75
SHMT1-207ENST00000580002 ETV3LQ6ZN32 361 aa19.75■□□□□ 0.75
SHMT1-207ENST00000580002 PRSS46E5RG02 174 aa19.75■□□□□ 0.75
SHMT1-207ENST00000580002 OR8U8P0C7N1 319 aa19.75■□□□□ 0.75
SHMT1-207ENST00000580002 RBMS3Q6XE24 437 aaKnown RBP19.75■□□□□ 0.75
SHMT1-207ENST00000580002 SGMS2Q8NHU3 365 aa19.75■□□□□ 0.75
SHMT1-207ENST00000580002 WNT10AQ9GZT5 417 aa19.75■□□□□ 0.75
SHMT1-207ENST00000580002 IGHV3-48P01763 117 aa19.74■□□□□ 0.75
SHMT1-207ENST00000580002 IFNA4P05014 189 aa19.74■□□□□ 0.75
SHMT1-207ENST00000580002 CTRB1P17538 263 aa19.74■□□□□ 0.75
SHMT1-207ENST00000580002 C2orf83Q53S99 150 aa19.74■□□□□ 0.75
SHMT1-207ENST00000580002 RPL7L1Q6DKI1 246 aaKnown RBP19.74■□□□□ 0.75
SHMT1-207ENST00000580002 CTRB2Q6GPI1 263 aa19.74■□□□□ 0.75
SHMT1-207ENST00000580002 STX12Q86Y82 276 aa19.74■□□□□ 0.75
SHMT1-207ENST00000580002 M0QZK8 103 aa19.73■□□□□ 0.75
SHMT1-207ENST00000580002 BCL2L11O43521 198 aa19.73■□□□□ 0.75
SHMT1-207ENST00000580002 IGHG2P01859 326 aa19.73■□□□□ 0.75
SHMT1-207ENST00000580002 DEFA5Q01523 94 aa19.73■□□□□ 0.75
SHMT1-207ENST00000580002 UNQ5815/PRO19632Q6UWF5 114 aa19.73■□□□□ 0.75
SHMT1-207ENST00000580002 IGHV3-21A0A0B4J1V1 117 aa19.72■□□□□ 0.75
SHMT1-207ENST00000580002 ARPC5LQ9BPX5 153 aa19.72■□□□□ 0.75
SHMT1-207ENST00000580002 RFNGQ9Y644 331 aa19.72■□□□□ 0.75
SHMT1-207ENST00000580002 SLC38A11Q08AI6 406 aa19.72■□□□□ 0.75
SHMT1-207ENST00000580002 SLC35E3Q7Z769 313 aa19.72■□□□□ 0.75
SHMT1-207ENST00000580002 F11RQ9Y624 299 aaKnown RBP19.72■□□□□ 0.75
SHMT1-207ENST00000580002 MAST4O15021 2626 aa19.71■□□□□ 0.75
SHMT1-207ENST00000580002 KANTRA0A1W2PQU2 76 aa19.71■□□□□ 0.75
SHMT1-207ENST00000580002 FBXO24O75426 580 aa19.71■□□□□ 0.75
SHMT1-207ENST00000580002 RPP30P78346 268 aaKnown RBP19.71■□□□□ 0.75
SHMT1-207ENST00000580002 SRSF2Q01130 221 aaKnown RBP19.71■□□□□ 0.75
SHMT1-207ENST00000580002 BAXQ07812 192 aa19.71■□□□□ 0.75
SHMT1-207ENST00000580002 TTC9CQ8N5M4 171 aa19.71■□□□□ 0.75
SHMT1-207ENST00000580002 OR10P1Q8NGE3 313 aa19.71■□□□□ 0.75
SHMT1-207ENST00000580002 OR1S2Q8NGQ3 325 aa19.71■□□□□ 0.75
SHMT1-207ENST00000580002 FNDC4Q9H6D8 234 aaPredicted RBP19.71■□□□□ 0.75
SHMT1-207ENST00000580002 TEP1Q99973 2627 aaKnown RBP19.71■□□□□ 0.75
SHMT1-207ENST00000580002 SOX15O60248 233 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 SLC25A24Q6NUK1 477 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 PINX1Q96BK5 328 aaKnown RBP19.7■□□□□ 0.74
SHMT1-207ENST00000580002 SRSF8Q9BRL6 282 aaKnown RBP19.7■□□□□ 0.74
SHMT1-207ENST00000580002 ZNF471Q9BX82 626 aaPredicted RBP19.7■□□□□ 0.74
SHMT1-207ENST00000580002 ZNF702PQ9H963 129 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 FAM181BA6NEQ2 426 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 LY86O95711 162 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 CFDP00746 253 aaPredicted RBP19.7■□□□□ 0.74
SHMT1-207ENST00000580002 CRYGCP07315 174 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 RAB11AP62491 216 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 IFITM2Q01629 132 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 C19orf54Q5BKX5 351 aa19.7■□□□□ 0.74
SHMT1-207ENST00000580002 TMEM86BQ8N661 226 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms