RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 DYNLRB2Q8TF09 96 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 SOSTQ9BQB4 213 aa18.13■□□□□ 0.49
SHMT1-206ENST00000579558 ZNF320A2RRD8 509 aa18.12■□□□□ 0.49
SHMT1-206ENST00000579558 IZUMO1RA6ND01 250 aa18.12■□□□□ 0.49
SHMT1-206ENST00000579558 PRCDQ00LT1 54 aa18.12■□□□□ 0.49
SHMT1-206ENST00000579558 SURF2Q15527 256 aaPredicted RBP18.12■□□□□ 0.49
SHMT1-206ENST00000579558 Q8N1Y9 231 aa18.12■□□□□ 0.49
SHMT1-206ENST00000579558 OR1L6Q8NGR2 347 aa18.12■□□□□ 0.49
SHMT1-206ENST00000579558 OR2K2Q8NGT1 345 aa18.12■□□□□ 0.49
SHMT1-206ENST00000579558 PRRT1Q99946 306 aa18.12■□□□□ 0.49
SHMT1-206ENST00000579558 B3GALNT1O75752 331 aa18.11■□□□□ 0.49
SHMT1-206ENST00000579558 FRMD6-AS1P0C7T7 363 aa18.11■□□□□ 0.49
SHMT1-206ENST00000579558 FOLR2P14207 255 aa18.11■□□□□ 0.49
SHMT1-206ENST00000579558 EDN2P20800 178 aa18.11■□□□□ 0.49
SHMT1-206ENST00000579558 UCP1P25874 307 aa18.11■□□□□ 0.49
SHMT1-206ENST00000579558 HSPE1P61604 102 aaKnown RBP18.11■□□□□ 0.49
SHMT1-206ENST00000579558 PLET1Q6UQ28 207 aa18.11■□□□□ 0.49
SHMT1-206ENST00000579558 OR51S1Q8NGJ8 323 aa18.11■□□□□ 0.49
SHMT1-206ENST00000579558 RTBDNQ9BSG5 229 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-206ENST00000579558 IGHV3-21A0A0B4J1V1 117 aa18.1■□□□□ 0.49
SHMT1-206ENST00000579558 TEX13DA0A0J9YY54 714 aaPredicted RBP18.1■□□□□ 0.49
SHMT1-206ENST00000579558 CD300EQ496F6 205 aaPredicted RBP18.1■□□□□ 0.49
SHMT1-206ENST00000579558 SGPP2Q8IWX5 399 aa18.1■□□□□ 0.49
SHMT1-206ENST00000579558 OR2C3Q8N628 320 aa18.1■□□□□ 0.49
SHMT1-206ENST00000579558 OR1P1Q8NH06 330 aa18.1■□□□□ 0.49
SHMT1-206ENST00000579558 RBM38Q9H0Z9 239 aaKnown RBP18.1■□□□□ 0.49
SHMT1-206ENST00000579558 A8MWP6 167 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 TGOLN2O43493 480 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 P0C879 139 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 GTSCR1Q86UQ5 136 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 RNASE11Q8TAA1 199 aaKnown RBP18.09■□□□□ 0.49
SHMT1-206ENST00000579558 C5orf66Q9H5L9 145 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 NAA60Q9H7X0 242 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 PLEKHA3Q9HB20 300 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 C21orf62Q9NYP8 219 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 GPR132Q9UNW8 380 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 U3KQK5 164 aa18.09■□□□□ 0.49
SHMT1-206ENST00000579558 IGHV3-35A0A0C4DH35 117 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 TMEM213A2RRL7 107 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 OR2T8A6NH00 312 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 K7EIM0 57 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 OR5AC1P0C628 307 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 IGHV4-30-4P0DP06 118 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 DEFB114Q30KQ6 69 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 SPINK9Q5DT21 86 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 SBSPONQ8IVN8 264 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 SCARB1Q8WTV0 552 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 CACNG8Q8WXS5 425 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 RRNAD1Q96FB5 475 aaKnown RBP18.08■□□□□ 0.48
SHMT1-206ENST00000579558 THAP7Q9BT49 309 aaPredicted RBP18.08■□□□□ 0.48
SHMT1-206ENST00000579558 TMEM222Q9H0R3 208 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 MCUBQ9NWR8 336 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 SLC2A8Q9NY64 477 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 TECRQ9NZ01 308 aaKnown RBP18.08■□□□□ 0.48
SHMT1-206ENST00000579558 SCP2D1Q9UJQ7 156 aa18.08■□□□□ 0.48
SHMT1-206ENST00000579558 A0A0B4J293 547 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 CBLN1P23435 193 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 S100A5P33763 92 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 ERHP84090 104 aaKnown RBP18.07■□□□□ 0.48
SHMT1-206ENST00000579558 PYDC2Q56P42 97 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 UNQ9165/PRO28630Q6UXU0 137 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 SLC35G3Q8N808 338 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 ZNF114Q8NC26 417 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 MISP3Q96FF7 219 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 BSCL2Q96G97 398 aaPredicted RBP18.07■□□□□ 0.48
SHMT1-206ENST00000579558 PDCD10Q9BUL8 212 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 PALMDQ9NP74 551 aa18.07■□□□□ 0.48
SHMT1-206ENST00000579558 A0A0G2JRQ6 117 aa18.06■□□□□ 0.48
SHMT1-206ENST00000579558 ST8SIA3O43173 380 aa18.06■□□□□ 0.48
SHMT1-206ENST00000579558 IFNA17P01571 189 aa18.06■□□□□ 0.48
SHMT1-206ENST00000579558 Q56UQ5 140 aa18.06■□□□□ 0.48
SHMT1-206ENST00000579558 UBAC2Q8NBM4 344 aa18.06■□□□□ 0.48
SHMT1-206ENST00000579558 ATP6V0BQ99437 205 aa18.06■□□□□ 0.48
SHMT1-206ENST00000579558 CRYM-AS1A6NIL9 109 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 ZNF701M0R085 212 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-206ENST00000579558 CDS2O95674 445 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 DHODHQ02127 395 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 TM4SF20Q53R12 229 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 SPSB3Q6PJ21 355 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 UXS1Q8NBZ7 420 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 GLYATL2Q8WU03 294 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 ZNF436Q9C0F3 470 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-206ENST00000579558 UFC1Q9Y3C8 167 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 V9GYH0 126 aa18.05■□□□□ 0.48
SHMT1-206ENST00000579558 A8MZ25 164 aa18.04■□□□□ 0.48
SHMT1-206ENST00000579558 F8W735 103 aaPredicted RBP18.04■□□□□ 0.48
SHMT1-206ENST00000579558 GUCA2BQ16661 112 aa18.04■□□□□ 0.48
SHMT1-206ENST00000579558 LHFPL5Q8TAF8 219 aa18.04■□□□□ 0.48
SHMT1-206ENST00000579558 RBPMSQ93062 196 aaKnown RBP18.04■□□□□ 0.48
SHMT1-206ENST00000579558 WWC2-AS2Q96NR7 200 aa18.04■□□□□ 0.48
SHMT1-206ENST00000579558 SCGB3A2Q96PL1 93 aa18.04■□□□□ 0.48
SHMT1-206ENST00000579558 C19orf73Q9NVV2 129 aa18.04■□□□□ 0.48
SHMT1-206ENST00000579558 SELENOKQ9Y6D0 94 aa18.04■□□□□ 0.48
SHMT1-206ENST00000579558 ZNF785A8K8V0 405 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 I3L2K1 104 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 FAUP35544 74 aaKnown RBP18.03■□□□□ 0.48
SHMT1-206ENST00000579558 CD81P60033 236 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 ZNF57Q68EA5 555 aaPredicted RBP18.03■□□□□ 0.48
SHMT1-206ENST00000579558 FAM219AQ8IW50 185 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 SELENOHQ8IZQ5 122 aaKnown RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms