RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 IMPA1P29218 277 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 CCR6P51684 374 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 PLGLB1Q02325 96 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 GNA12Q03113 381 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 JOSD1Q15040 202 aaPredicted RBP3.91□□□□□ -1.78
VPS53-219ENST00000576019 ACSBG2Q5FVE4 666 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 HENMT1Q5T8I9 393 aaKnown RBP3.91□□□□□ -1.78
VPS53-219ENST00000576019 ELP2Q6IA86 826 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 SCGB1D4Q6XE38 83 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 FA2HQ7L5A8 372 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 VN1R4Q7Z5H5 301 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 MARCH3Q86UD3 253 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 TMEM86BQ8N661 226 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 SLC25A29Q8N8R3 303 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 C9orf106Q8NAJ2 232 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 OR4K5Q8NGD3 323 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 OR2K2Q8NGT1 345 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 TEX47Q8TBZ9 253 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 FAM172AQ8WUF8 416 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 GNB1LQ9BYB4 327 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 C8orf17Q9NRJ1 99 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 FAIMQ9NVQ4 179 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 PRELID3BQ9Y3B1 194 aa3.91□□□□□ -1.78
VPS53-219ENST00000576019 H0YJW9 148 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 ISLRO14498 428 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 SOCS1O15524 211 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 CD36P16671 472 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 GATA2P23769 480 aaPredicted RBP3.9□□□□□ -1.79
VPS53-219ENST00000576019 GTF2A1P52655 376 aaPredicted RBP3.9□□□□□ -1.79
VPS53-219ENST00000576019 KRTAP10-11P60412 298 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 DAD1P61803 113 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 GNB2P62879 340 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 RPL19P84098 196 aaKnown RBP3.9□□□□□ -1.79
VPS53-219ENST00000576019 BAMBIQ13145 260 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 KRR1Q13601 381 aaKnown RBP3.9□□□□□ -1.79
VPS53-219ENST00000576019 ZNF239Q16600 458 aaKnown RBP3.9□□□□□ -1.79
VPS53-219ENST00000576019 ZNF720Q7Z2F6 126 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 CALHM3Q86XJ0 350 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 ZNF555Q8NEP9 628 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 OR1L8Q8NGR8 309 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 OR5K1Q8NHB7 308 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 OLFM3Q96PB7 478 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 ZNF382Q96SR6 550 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 SIGMAR1Q99720 223 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 NRTNQ99748 197 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 ZNF717Q9BY31 904 aaPredicted RBP3.9□□□□□ -1.79
VPS53-219ENST00000576019 NANOGQ9H9S0 305 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 TMEM216Q9P0N5 145 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 OR12D3Q9UGF7 316 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 ZNF391Q9UJN7 358 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 LRP2P98164 4655 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 NINQ8N4C6 2090 aa3.9□□□□□ -1.79
VPS53-219ENST00000576019 LRP1BQ9NZR2 4599 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 IGLV3-10A0A075B6K4 115 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 IGHV3-64DA0A0J9YX35 117 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 BCL2L11O43521 198 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 YIF1AO95070 293 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 SNRPAP09012 282 aaKnown RBP3.89□□□□□ -1.79
VPS53-219ENST00000576019 CST2P09228 141 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 ELK4P28324 431 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 LHX2P50458 406 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 CMC4P56277 68 aaPredicted RBP3.89□□□□□ -1.79
VPS53-219ENST00000576019 RAB5BP61020 215 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 IFITM2Q01629 132 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 EDDM3AQ14507 147 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 PTGES3Q15185 160 aaKnown RBP3.89□□□□□ -1.79
VPS53-219ENST00000576019 RNASE13Q5GAN3 156 aaKnown RBP3.89□□□□□ -1.79
VPS53-219ENST00000576019 OTPQ5XKR4 325 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 ZNF774Q6NX45 483 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 DHRS4L2Q6PKH6 230 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 Q6ZRU5 148 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 ATP5L2Q7Z4Y8 100 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 LYG2Q86SG7 212 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 RPS19BP1Q86WX3 136 aaKnown RBP3.89□□□□□ -1.79
VPS53-219ENST00000576019 PCP2Q8IVA1 136 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 TMEM256Q8N2U0 113 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 RPP25LQ8N5L8 163 aaKnown RBP3.89□□□□□ -1.79
VPS53-219ENST00000576019 TBC1D19Q8N5T2 526 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 Q8N976 141 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 OR2V1Q8NHB1 315 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 YIPF5Q969M3 257 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 DERL3Q96Q80 235 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 TMEM109Q9BVC6 243 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 GFRA4Q9GZZ7 299 aa3.89□□□□□ -1.79
VPS53-219ENST00000576019 RPP21Q9H633 154 aaKnown RBP3.89□□□□□ -1.79
VPS53-219ENST00000576019 DNAH17Q9UFH2 4485 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 A0A0G2JMM0 328 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 A0A1W2PPB8 328 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 A0A1W2PRS3 328 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 KIR3DP1A8MWS1 328 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 DISC1C4P0D8 188 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 PLIN3O60664 434 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 HAND1O96004 215 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 IGKV1-39P01597 117 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 APCSP02743 223 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 IGKV1D-39P04432 117 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 S100A2P29034 98 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 TMEM33P57088 247 aa3.88□□□□□ -1.79
VPS53-219ENST00000576019 EMX1Q04741 257 aaPredicted RBP3.88□□□□□ -1.79
VPS53-219ENST00000576019 PRDX4Q13162 271 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms