RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 HSD17B13Q7Z5P4 300 aaPredicted RBP6.67□□□□□ -1.34
NUP88-211ENST00000575976 OR2C3Q8N628 320 aa6.67□□□□□ -1.34
NUP88-211ENST00000575976 RNF152Q8N8N0 203 aa6.67□□□□□ -1.34
NUP88-211ENST00000575976 OR10C1Q96KK4 312 aa6.67□□□□□ -1.34
NUP88-211ENST00000575976 PLEKHA3Q9HB20 300 aa6.67□□□□□ -1.34
NUP88-211ENST00000575976 ALG5Q9Y673 324 aa6.67□□□□□ -1.34
NUP88-211ENST00000575976 TET2Q6N021 2002 aaPredicted RBP6.67□□□□□ -1.34
NUP88-211ENST00000575976 A0A1W2PRX2 142 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 C5orf51A6NDU8 294 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 CEBPZOSA8MTT3 80 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 ADARB2-AS1A8MUL3 147 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 FAM25EA8MYX2 175 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 INS-IGF2F8WCM5 200 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 OR2J3O76001 311 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 BRI3O95415 125 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 DEFA4P12838 97 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 HOXA1P49639 335 aaPredicted RBP6.66□□□□□ -1.34
NUP88-211ENST00000575976 MFAP2P55001 183 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 TPPP2P59282 170 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 RPL23AP62750 156 aaKnown RBP6.66□□□□□ -1.34
NUP88-211ENST00000575976 ERHP84090 104 aaKnown RBP6.66□□□□□ -1.34
NUP88-211ENST00000575976 DEFA5Q01523 94 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 TNFRSF9Q07011 255 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 IAH1Q2TAA2 248 aaPredicted RBP6.66□□□□□ -1.34
NUP88-211ENST00000575976 NSUN5P1Q3KNT7 163 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 KHDC1LQ5JSQ8 128 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 C18orf65Q6ZTR6 163 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 NDUFA11Q86Y39 141 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 ZNF491Q8N8L2 437 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 ZBTB8BQ8NAP8 495 aaPredicted RBP6.66□□□□□ -1.34
NUP88-211ENST00000575976 OR4D5Q8NGN0 318 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 MYOZ3Q8TDC0 251 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 FANCD2OSQ96PS1 177 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 P2RX4Q99571 388 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 RBKSQ9H477 322 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 SLA2Q9H6Q3 261 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 ENY2Q9NPA8 101 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 ZFP57Q9NU63 452 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 GSKIPQ9P0R6 139 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 HSPB7Q9UBY9 170 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 DMRT1Q9Y5R6 373 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 TSSC4Q9Y5U2 329 aaPredicted RBP6.66□□□□□ -1.34
NUP88-211ENST00000575976 NBEAL2Q6ZNJ1 2754 aa6.66□□□□□ -1.34
NUP88-211ENST00000575976 IGLV11-55A0A075B6I3 123 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 TRBV9A0A0B4J1U6 114 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 FAM90A26D6RGX4 464 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 GOSR2O14653 212 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 SSNA1O43805 119 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 NDUFB8O95169 186 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 SIX6O95475 246 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 CDX1P47902 265 aaPredicted RBP6.65□□□□□ -1.34
NUP88-211ENST00000575976 POLR2GP62487 172 aaKnown RBP eCLIP6.65□□□□□ -1.34
NUP88-211ENST00000575976 RHOGP84095 191 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 ID3Q02535 119 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 KLK9Q2XQG4 91 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 SLC25A24Q6NUK1 477 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 GSG1LQ6UXU4 331 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 MRPL41Q8IXM3 137 aaKnown RBP6.65□□□□□ -1.34
NUP88-211ENST00000575976 DTD1Q8TEA8 209 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 UBE2E2Q96LR5 201 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 C2orf50Q96LR7 162 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 OR5B12Q96R08 314 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 MAGT1Q9H0U3 335 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 GNB4Q9HAV0 340 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 CACFD1Q9UGQ2 172 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 FBXL7Q9UJT9 491 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 KLK9Q9UKQ9 250 aa6.65□□□□□ -1.34
NUP88-211ENST00000575976 F11RQ9Y624 299 aaKnown RBP6.65□□□□□ -1.34
NUP88-211ENST00000575976 NUDT19A8MXV4 375 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 WRBO00258 174 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 SYNGR2O43760 224 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 MED6O75586 246 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 SCGB1D2O95969 90 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 IGHV3-11P01762 117 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 RNASE2P10153 161 aaKnown RBP6.64□□□□□ -1.35
NUP88-211ENST00000575976 IAPPP10997 89 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 HIST1H1BP16401 226 aaKnown RBP6.64□□□□□ -1.35
NUP88-211ENST00000575976 SNCAP37840 140 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 NKX2-1P43699 371 aaPredicted RBP6.64□□□□□ -1.35
NUP88-211ENST00000575976 IL15RAQ13261 267 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 BSXQ3C1V8 233 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 C8orf86Q6ZUL3 223 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 ZNF114Q8NC26 417 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 KLHL30-AS1Q8NEE0 82 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 OR1L6Q8NGR2 347 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 OR1P1Q8NH06 330 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 WDR89Q96FK6 387 aaPredicted RBP6.64□□□□□ -1.35
NUP88-211ENST00000575976 HIPK2Q9H2X6 1198 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 HEYLQ9NQ87 328 aaPredicted RBP6.64□□□□□ -1.35
NUP88-211ENST00000575976 MGAT4CQ9UBM8 478 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 S4R3C0 116 aa6.64□□□□□ -1.35
NUP88-211ENST00000575976 A0A0G2JLM5 398 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 FAM223BA6NKX1 122 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 MBPP02686 304 aaPredicted RBP6.63□□□□□ -1.35
NUP88-211ENST00000575976 HTR2BP41595 481 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 SUB1P53999 127 aaKnown RBP eCLIP6.63□□□□□ -1.35
NUP88-211ENST00000575976 ATP5G2Q06055 141 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 PVRIGQ6DKI7 326 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 FAM223AQ8IWN6 122 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 NECAP1Q8NC96 275 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms