RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 RAB3BP20337 219 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 FXYD4P59646 89 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 ARPC4P59998 168 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 RELQ04864 619 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-211ENST00000574099 ZNF767PQ75MW2 155 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 CENPSQ8N2Z9 138 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 FAM24BQ8N5W8 94 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 OR1L8Q8NGR8 309 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 LSM10Q969L4 123 aaKnown RBP12.7□□□□□ -0.38
CCDC40-211ENST00000574099 ATP6V0BQ99437 205 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 MGLLQ99685 303 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 SLC5A7Q9GZV3 580 aa12.7□□□□□ -0.38
CCDC40-211ENST00000574099 ELOA3CA0A087WX78 387 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-211ENST00000574099 TRAV14DV4A0A0A6YYC5 116 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 TRAV1-2A0A0B4J238 106 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 PPYP01298 95 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 PAFAH1B2P68402 229 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 HSD17B13Q7Z5P4 300 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-211ENST00000574099 STHQ8IWL8 128 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 POM121L12Q8N7R1 296 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 OR10C1Q96KK4 312 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 RNF126Q9BV68 326 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 NSG2Q9Y328 171 aa12.69□□□□□ -0.38
CCDC40-211ENST00000574099 IGHV3-66A0A0C4DH42 116 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 DNASE2O00115 360 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-211ENST00000574099 RGS10O43665 173 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 FCER2P06734 321 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 ERVK-16P61578 105 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 MSMO1Q15800 293 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 OGFRL1Q5TC84 451 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-211ENST00000574099 AADACL3Q5VUY0 350 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 ST8SIA2Q92186 375 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 SCRT1Q9BWW7 348 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 MS4A6AQ9H2W1 248 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 PLEKHA2Q9HB19 425 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 NDUFA4L2Q9NRX3 87 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 PLA2G2EQ9NZK7 142 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 CELA1Q9UNI1 258 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 TPRKBQ9Y3C4 175 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 AGRNO00468 2067 aa12.68□□□□□ -0.38
CCDC40-211ENST00000574099 ST8SIA3O43173 380 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 IGHV3-48P01763 117 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 AMBPP02760 352 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 EIF4EP06730 217 aaKnown RBP12.67□□□□□ -0.38
CCDC40-211ENST00000574099 GIG44P09565 113 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-211ENST00000574099 P0DMU3 169 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 FAM231AP0DMU4 169 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 FAM231CP0DMU5 169 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 MIFP14174 115 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 C4BPBP20851 252 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 RPL11P62913 178 aaKnown RBP12.67□□□□□ -0.38
CCDC40-211ENST00000574099 ZNF818PQ6ZRF7 136 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 TMEM17Q86X19 198 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 ZBTB34Q8NCN2 500 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 BEST4Q8NFU0 473 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 SLC25A46Q96AG3 418 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 DGCR14Q96DF8 476 aaKnown RBP12.67□□□□□ -0.38
CCDC40-211ENST00000574099 MISP3Q96FF7 219 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 COMMD9Q9P000 198 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 OR51B2Q9Y5P1 312 aa12.67□□□□□ -0.38
CCDC40-211ENST00000574099 IGLV2-18A0A075B6J9 118 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 DEFB131BA0A096LNP1 70 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 MARCH11A6NNE9 402 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 CASQ2O14958 399 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-211ENST00000574099 APOHP02749 345 aaPredicted RBP12.66□□□□□ -0.38
CCDC40-211ENST00000574099 FGF2P09038 288 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 LILRB2Q8N423 598 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 DUSP21Q9H596 190 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 CLEC5AQ9NY25 188 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 RABAC1Q9UI14 185 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 X6R8D5 127 aa12.66□□□□□ -0.38
CCDC40-211ENST00000574099 DFFBO76075 338 aa12.65□□□□□ -0.38
CCDC40-211ENST00000574099 C22orf42Q6IC83 251 aa12.65□□□□□ -0.38
CCDC40-211ENST00000574099 NXF2Q9GZY0 626 aaKnown RBP12.65□□□□□ -0.38
CCDC40-211ENST00000574099 ZNF705EA8MWA4 302 aaPredicted RBP12.64□□□□□ -0.39
CCDC40-211ENST00000574099 G6PCP35575 357 aa12.64□□□□□ -0.39
CCDC40-211ENST00000574099 MFAP4P55083 255 aa12.64□□□□□ -0.39
CCDC40-211ENST00000574099 C12orf74Q32Q52 190 aa12.64□□□□□ -0.39
CCDC40-211ENST00000574099 TRPT1Q86TN4 253 aaKnown RBP12.64□□□□□ -0.39
CCDC40-211ENST00000574099 GINS3Q9BRX5 216 aa12.64□□□□□ -0.39
CCDC40-211ENST00000574099 NDUFAF3Q9BU61 184 aa12.64□□□□□ -0.39
CCDC40-211ENST00000574099 HSPG2P98160 4391 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 DBX1A6NMT0 343 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 KNCNA6PVL3 124 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 I3L2K1 104 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 GNG7O60262 68 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 SNAPC5O75971 98 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 KRASP01116 189 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 RLN1P04808 185 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 LGALS9BQ3B8N2 356 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 OR1P1Q8NH06 330 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 LGALS14Q8TCE9 139 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 PINX1Q96BK5 328 aaKnown RBP12.63□□□□□ -0.39
CCDC40-211ENST00000574099 TMEM56Q96MV1 263 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 VCXQ9H320 206 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 VSIRQ9H7M9 311 aa12.63□□□□□ -0.39
CCDC40-211ENST00000574099 SCGNO76038 276 aa12.62□□□□□ -0.39
CCDC40-211ENST00000574099 MT-CO2P00403 227 aa12.62□□□□□ -0.39
CCDC40-211ENST00000574099 CD5P06127 495 aa12.62□□□□□ -0.39
CCDC40-211ENST00000574099 SPP1P10451 314 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms