RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 C5orf66Q9H5L9 145 aa8.14□□□□□ -1.11
VPS53-207ENST00000570510 BET1LQ9NYM9 111 aa8.14□□□□□ -1.11
VPS53-207ENST00000570510 EHFQ9NZC4 300 aa8.14□□□□□ -1.11
VPS53-207ENST00000570510 COMMD9Q9P000 198 aa8.14□□□□□ -1.11
VPS53-207ENST00000570510 NDUFA13Q9P0J0 144 aa8.14□□□□□ -1.11
VPS53-207ENST00000570510 MTFP1Q9UDX5 166 aa8.14□□□□□ -1.11
VPS53-207ENST00000570510 RSL24D1Q9UHA3 163 aaKnown RBP8.14□□□□□ -1.11
VPS53-207ENST00000570510 UFC1Q9Y3C8 167 aa8.14□□□□□ -1.11
VPS53-207ENST00000570510 TRAV10A0A0B4J240 114 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 CDK2AP2O75956 126 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 CRYZL1O95825 349 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 DHFRP00374 187 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 NQO2P16083 231 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 PTBP1P26599 531 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS53-207ENST00000570510 GNRHRP30968 328 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 ADMP35318 185 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 KLK9Q2XQG4 91 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 IDO2Q6ZQW0 420 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 HSD17B13Q7Z5P4 300 aaPredicted RBP8.13□□□□□ -1.11
VPS53-207ENST00000570510 LYSMD2Q8IV50 215 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 PUSL1Q8N0Z8 303 aaKnown RBP8.13□□□□□ -1.11
VPS53-207ENST00000570510 TTC9CQ8N5M4 171 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 TMEM167AQ8TBQ9 72 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 SECTM1Q8WVN6 248 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 C5orf30Q96GV9 206 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 OR2A7Q96R45 310 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 NXF2Q9GZY0 626 aaKnown RBP8.13□□□□□ -1.11
VPS53-207ENST00000570510 EXTL2Q9UBQ6 330 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 KLK9Q9UKQ9 250 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 S4R3C0 116 aa8.13□□□□□ -1.11
VPS53-207ENST00000570510 PIGBOS1A0A0B4J2F0 54 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 SRRM4A7MD48 611 aaKnown RBP8.12□□□□□ -1.11
VPS53-207ENST00000570510 GPR31O00270 319 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 TSPAN4O14817 238 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 RGS5O15539 181 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 FCGR3BO75015 233 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 IFNA10P01566 189 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 IFNA21P01568 189 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 IFNA17P01571 189 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 CD74P04233 296 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 RPA2P15927 270 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 HRH1P35367 487 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 TAS2R19P59542 299 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 RND3P61587 244 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 TSPAN5P62079 268 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 MEF2DQ14814 521 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 SPCS2Q15005 226 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 SURF2Q15527 256 aaPredicted RBP8.12□□□□□ -1.11
VPS53-207ENST00000570510 UBE2DNLQ8IWF7 75 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 TMEM229BQ8NBD8 167 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 TCTEX1D2Q8WW35 142 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 ZNF2Q9BSG1 426 aaPredicted RBP8.12□□□□□ -1.11
VPS53-207ENST00000570510 SLIRPQ9GZT3 109 aaKnown RBP8.12□□□□□ -1.11
VPS53-207ENST00000570510 ZNF257Q9Y2Q1 563 aa8.12□□□□□ -1.11
VPS53-207ENST00000570510 DNAH6Q9C0G6 4158 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 FAT2Q9NYQ8 4349 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 DNAH2Q9P225 4427 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 IGHV3-35A0A0C4DH35 117 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 H3BMQ9 156 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 GSTZ1O43708 216 aaPredicted RBP8.11□□□□□ -1.11
VPS53-207ENST00000570510 CA1P00915 261 aaPredicted RBP8.11□□□□□ -1.11
VPS53-207ENST00000570510 CLEC3BP05452 202 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 FCER2P06734 321 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 IL6RP08887 468 aaPredicted RBP8.11□□□□□ -1.11
VPS53-207ENST00000570510 SAA1P0DJI8 122 aaPredicted RBP8.11□□□□□ -1.11
VPS53-207ENST00000570510 DEFA4P12838 97 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 F2RP25116 425 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 HLA-DMBP28068 263 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 RFX2P48378 723 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 CMC4P56277 68 aaPredicted RBP8.11□□□□□ -1.11
VPS53-207ENST00000570510 TMEM187Q14656 261 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 LGALS9BQ3B8N2 356 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 ODF3L2Q3SX64 289 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 RNASE10Q5GAN6 216 aaKnown RBP8.11□□□□□ -1.11
VPS53-207ENST00000570510 APRG1Q8IVJ8 170 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 SPAG16Q8N0X2 631 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 ZFAND1Q8TCF1 268 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 SMIM4Q8WVI0 70 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 TSC22D3Q99576 134 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 DCUN1D5Q9BTE7 237 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 RNF126Q9BV68 326 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 HRH4Q9H3N8 390 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 SCRT2Q9NQ03 307 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 CCL28Q9NRJ3 127 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 FKBP11Q9NYL4 201 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 DMRT1Q9Y5R6 373 aa8.11□□□□□ -1.11
VPS53-207ENST00000570510 TRBV7-1A0A0A6YYK4 115 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 CYB5BO43169 146 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 PGLYRP1O75594 196 aaPredicted RBP8.1□□□□□ -1.11
VPS53-207ENST00000570510 ATG12O94817 140 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 KBTBD11O94819 623 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 C8orf88P0DMB2 117 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 HLA-DMAP28067 261 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 ELLP55199 621 aaPredicted RBP8.1□□□□□ -1.11
VPS53-207ENST00000570510 RPL30P62888 115 aaKnown RBP8.1□□□□□ -1.11
VPS53-207ENST00000570510 PLET1Q6UQ28 207 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 UNQ9165/PRO28630Q6UXU0 137 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 ZNF818PQ6ZRF7 136 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 LHFPL1Q86WI0 220 aa8.1□□□□□ -1.11
VPS53-207ENST00000570510 SNX29P2Q8IUI4 249 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms