RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	CCS	O14618	274 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	NXPH3	O95157	252 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	TRGV3	P03979	118 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	MFAP2	P55001	183 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	TPPP2	P59282	170 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	C2orf68	Q2NKX9	166 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	NSUN5P1	Q3KNT7	163 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	KHDC1L	Q5JSQ8	128 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	TMEM65	Q6PI78	240 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	OR10C1	Q96KK4	312 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	PDCD10	Q9BUL8	212 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	GNB4	Q9HAV0	340 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	ZNF355P	Q9NSJ1	428 aa		13.97	□□□□□ -0.17
COMMD4-222	ENST00000568034	CMYA5	Q8N3K9	4069 aa		13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	DHFR	P00374	187 aa		13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	CDX1	P47902	265 aa	Predicted RBP	13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	TNFRSF9	Q07011	255 aa		13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	ZNF114	Q8NC26	417 aa		13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	OR4D5	Q8NGN0	318 aa		13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	OR1S1	Q8NH92	325 aa		13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	UBE2E2	Q96LR5	201 aa		13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	P2RX4	Q99571	388 aa		13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	GPN1	Q9HCN4	374 aa	Predicted RBP	13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	F11R	Q9Y624	299 aa	Known RBP	13.96	□□□□□ -0.17
COMMD4-222	ENST00000568034	OR2J3	O76001	311 aa		13.95	□□□□□ -0.18
COMMD4-222	ENST00000568034	IFNA21	P01568	189 aa		13.95	□□□□□ -0.18
COMMD4-222	ENST00000568034	HOXA1	P49639	335 aa	Predicted RBP	13.95	□□□□□ -0.18
COMMD4-222	ENST00000568034	RHOG	P84095	191 aa		13.95	□□□□□ -0.18
COMMD4-222	ENST00000568034	TATDN3	Q17R31	274 aa		13.95	□□□□□ -0.18
COMMD4-222	ENST00000568034	BSX	Q3C1V8	233 aa		13.95	□□□□□ -0.18
COMMD4-222	ENST00000568034	UXS1	Q8NBZ7	420 aa		13.95	□□□□□ -0.18
COMMD4-222	ENST00000568034	WNK1	Q9H4A3	2382 aa		13.95	□□□□□ -0.18
COMMD4-222	ENST00000568034	NDUFB8	O95169	186 aa		13.94	□□□□□ -0.18
COMMD4-222	ENST00000568034	PVRIG	Q6DKI7	326 aa		13.94	□□□□□ -0.18
COMMD4-222	ENST00000568034	C8orf86	Q6ZUL3	223 aa		13.94	□□□□□ -0.18
COMMD4-222	ENST00000568034	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	13.94	□□□□□ -0.18
COMMD4-222	ENST00000568034	KLHL30-AS1	Q8NEE0	82 aa		13.94	□□□□□ -0.18
COMMD4-222	ENST00000568034	C4orf3	Q8WVX3	66 aa		13.94	□□□□□ -0.18
COMMD4-222	ENST00000568034	RBKS	Q9H477	322 aa		13.94	□□□□□ -0.18
COMMD4-222	ENST00000568034	FAM90A26	D6RGX4	464 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034		I3L521	148 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	TSPAN15	O95858	294 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	IGHV3-11	P01762	117 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	RNASE2	P10153	161 aa	Known RBP	13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	ERH	P84090	104 aa	Known RBP	13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	RUNX1	Q01196	453 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	IAH1	Q2TAA2	248 aa	Predicted RBP	13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	ETV3L	Q6ZN32	361 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	MRPL41	Q8IXM3	137 aa	Known RBP	13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	NECAP1	Q8NC96	275 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	OR1P1	Q8NH06	330 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	CACFD1	Q9UGQ2	172 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	ALG5	Q9Y673	324 aa		13.93	□□□□□ -0.18
COMMD4-222	ENST00000568034	FAM223B	A6NKX1	122 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	CEBPZOS	A8MTT3	80 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	LGALS1	P09382	135 aa	Known RBP	13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	DEFA4	P12838	97 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	HIST1H1B	P16401	226 aa	Known RBP	13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	ID3	Q02535	119 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	FAM223A	Q8IWN6	122 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	DTD1	Q8TEA8	209 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	TMEM170A	Q8WVE7	144 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	USMG5	Q96IX5	58 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	OR5B12	Q96R08	314 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	FBXL7	Q9UJT9	491 aa		13.92	□□□□□ -0.18
COMMD4-222	ENST00000568034	NUDT19	A8MXV4	375 aa		13.91	□□□□□ -0.18
COMMD4-222	ENST00000568034	DEFB136	Q30KP8	78 aa		13.91	□□□□□ -0.18
COMMD4-222	ENST00000568034	C15orf32	Q32M92	178 aa		13.91	□□□□□ -0.18
COMMD4-222	ENST00000568034	ENY2	Q9NPA8	101 aa		13.91	□□□□□ -0.18
COMMD4-222	ENST00000568034		A0A0G2JLM5	398 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	C13orf42	A0A1B0GVH6	325 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	MFSD2B	A6NFX1	497 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034		K7EIM0	57 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034		M0QZ24	198 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	GOSR2	O14653	212 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	IL15RA	Q13261	267 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	SLC25A24	Q6NUK1	477 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	ZNF343	Q6P1L6	599 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	OR1L6	Q8NGR2	347 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	RAX2	Q96IS3	184 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	MAGT1	Q9H0U3	335 aa		13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	HEYL	Q9NQ87	328 aa	Predicted RBP	13.9	□□□□□ -0.18
COMMD4-222	ENST00000568034	FAM25E	A8MYX2	175 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	SIX6	O95475	246 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	TRBV12-3	P01733	135 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	IAPP	P10997	89 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	NKX2-1	P43699	371 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	POLR2G	P62487	172 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	ATP5G2	Q06055	141 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	FHL3	Q13643	280 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	EXOSC2	Q13868	293 aa	Known RBP	13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	SLC24A4	Q8NFF2	622 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	C2orf50	Q96LR7	162 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	CCDC140	Q96MF4	163 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	DUX3	Q96PT4	197 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	GSKIP	Q9P0R6	139 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034		S4R3C0	116 aa		13.89	□□□□□ -0.19
COMMD4-222	ENST00000568034	C5orf51	A6NDU8	294 aa		13.88	□□□□□ -0.19
COMMD4-222	ENST00000568034		I3L2K1	104 aa		13.88	□□□□□ -0.19
COMMD4-222	ENST00000568034	SYNGR2	O43760	224 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms