RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 LSM10Q969L4 123 aaKnown RBP7.51□□□□□ -1.21
CLN3-220ENST00000566040 USMG5Q96IX5 58 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 AIFM2Q9BRQ8 373 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 ZNF355PQ9NSJ1 428 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 MRPL36Q9P0J6 103 aaKnown RBP7.51□□□□□ -1.21
CLN3-220ENST00000566040 SCP2D1Q9UJQ7 156 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 FBXL7Q9UJT9 491 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 PRNDQ9UKY0 176 aa7.51□□□□□ -1.21
CLN3-220ENST00000566040 C14orf166Q9Y224 244 aaKnown RBP7.51□□□□□ -1.21
CLN3-220ENST00000566040 I3L2K1 104 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 OVOL1O14753 267 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 PITX3O75364 302 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 B3GALNT1O75752 331 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 RNASE2P10153 161 aaKnown RBP7.5□□□□□ -1.21
CLN3-220ENST00000566040 AKR1C4P17516 323 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 ADMP35318 185 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 MECP2P51608 486 aaKnown RBP7.5□□□□□ -1.21
CLN3-220ENST00000566040 RAB25P57735 213 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 HSPE1P61604 102 aaKnown RBP7.5□□□□□ -1.21
CLN3-220ENST00000566040 ZNF57Q68EA5 555 aaPredicted RBP7.5□□□□□ -1.21
CLN3-220ENST00000566040 THOC7Q6I9Y2 204 aaKnown RBP7.5□□□□□ -1.21
CLN3-220ENST00000566040 SLC25A42Q86VD7 318 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 LRTM2Q8N967 370 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 IL22RA2Q969J5 263 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 PEF1Q9UBV8 284 aaKnown RBP7.5□□□□□ -1.21
CLN3-220ENST00000566040 CACNG5Q9UF02 275 aa7.5□□□□□ -1.21
CLN3-220ENST00000566040 STAB2Q8WWQ8 2551 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 IGHV3-21A0A0B4J1V1 117 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 A0A0G2JLM5 398 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 C13orf42A0A1B0GVH6 325 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 LINC00854A0A1B0GVQ3 168 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 SEC14L6B5MCN3 397 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 CSN3P07498 182 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 S100GP29377 79 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 AKR1C2P52895 323 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 AP3S2P59780 193 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 ATP5G2Q06055 141 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 TRIM16LQ309B1 348 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 TMED4Q7Z7H5 227 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 TSC22D3Q99576 134 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 SLC25A21Q9BQT8 299 aaPredicted RBP7.49□□□□□ -1.21
CLN3-220ENST00000566040 CHRDL1Q9BU40 450 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 HINT2Q9BX68 163 aa7.49□□□□□ -1.21
CLN3-220ENST00000566040 FNDC4Q9H6D8 234 aaPredicted RBP7.49□□□□□ -1.21
CLN3-220ENST00000566040 A0A0B4J2A0 478 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 MPTX1A8MV57 137 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 SNAPC5O75971 98 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 SFT2D2O95562 160 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 DUS4LO95620 317 aaKnown RBP7.48□□□□□ -1.21
CLN3-220ENST00000566040 IGLV1-51P01701 117 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 FAUP35544 74 aaKnown RBP7.48□□□□□ -1.21
CLN3-220ENST00000566040 SYNJ2BPP57105 145 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 RBMS2Q15434 407 aaKnown RBP7.48□□□□□ -1.21
CLN3-220ENST00000566040 TMEM128Q5BJH2 165 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 TRIQKQ629K1 86 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 CLEC19AQ6UXS0 136 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 UNQ9165/PRO28630Q6UXU0 137 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 FAM219AQ8IW50 185 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 SGPP2Q8IWX5 399 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 OR1P1Q8NH06 330 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 OR4A16Q8NH70 328 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 SCARB1Q8WTV0 552 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 CCDC32Q9BV29 185 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 RANGRFQ9HD47 186 aaPredicted RBP7.48□□□□□ -1.21
CLN3-220ENST00000566040 SHPKQ9UHJ6 478 aa7.48□□□□□ -1.21
CLN3-220ENST00000566040 TMEM213A2RRL7 107 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 C9orf170A2RU37 121 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 IZUMO1RA6ND01 250 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 NAP1L6A6NFF2 107 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 LYRM1O43325 122 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 NXPH3O95157 252 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 OR2C1O95371 312 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 IGHV3-48P01763 117 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 HIST1H1BP16401 226 aaKnown RBP7.47□□□□□ -1.21
CLN3-220ENST00000566040 ANXA7P20073 488 aaKnown RBP7.47□□□□□ -1.21
CLN3-220ENST00000566040 GPR183P32249 361 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 DHRS2Q13268 280 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 C9orf66Q5T8R8 295 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 HSD17B13Q7Z5P4 300 aaPredicted RBP7.47□□□□□ -1.21
CLN3-220ENST00000566040 CENPSQ8N2Z9 138 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 OR52B4Q8NGK2 314 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 OR52E5Q8NH55 327 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 VN1R17PQ8TDU5 208 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 CACNG8Q8WXS5 425 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 DPF1Q92782 380 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 C7orf50Q9BRJ6 194 aaKnown RBP7.47□□□□□ -1.21
CLN3-220ENST00000566040 ZNF436Q9C0F3 470 aaPredicted RBP7.47□□□□□ -1.21
CLN3-220ENST00000566040 ZC4H2Q9NQZ6 224 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 FKBP11Q9NYL4 201 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 HSPB7Q9UBY9 170 aa7.47□□□□□ -1.21
CLN3-220ENST00000566040 LSM4Q9Y4Z0 139 aaKnown RBP7.47□□□□□ -1.21
CLN3-220ENST00000566040 A8MWP6 167 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 ADAP1O75689 374 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 ZP3P21754 424 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 FCGR2BP31994 310 aaPredicted RBP7.46□□□□□ -1.22
CLN3-220ENST00000566040 UBE2MP61081 183 aaKnown RBP7.46□□□□□ -1.22
CLN3-220ENST00000566040 ASAH1Q13510 395 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 MLANAQ16655 118 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 REC114Q7Z4M0 266 aa7.46□□□□□ -1.22
CLN3-220ENST00000566040 OR9G4Q8NGQ1 327 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms