RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 MIXL1Q9H2W2 232 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 C21orf62Q9NYP8 219 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 MRPL27Q9P0M9 148 aaKnown RBP15.61■□□□□ 0.09
CLN3-219ENST00000565778 SCAF4O95104 1147 aaKnown RBP15.6■□□□□ 0.09
CLN3-219ENST00000565778 ELLP55199 621 aaPredicted RBP15.6■□□□□ 0.09
CLN3-219ENST00000565778 RND3P61587 244 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 SCGB2B2Q4G0G5 96 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 BTNL8Q6UX41 500 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 SLC16A13Q7RTY0 426 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 LHFPL1Q86WI0 220 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 TMEM61Q8N0U2 210 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 TMEM229BQ8NBD8 167 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 UBAC2Q8NBM4 344 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 TERB2Q8NHR7 220 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 ZFAND1Q8TCF1 268 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 BSCL2Q96G97 398 aaPredicted RBP15.6■□□□□ 0.09
CLN3-219ENST00000565778 ZNF436Q9C0F3 470 aaPredicted RBP15.6■□□□□ 0.09
CLN3-219ENST00000565778 CEPT1Q9Y6K0 416 aa15.6■□□□□ 0.09
CLN3-219ENST00000565778 GABARAPH6UMI1 98 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 RAB3DO95716 219 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 LYL1P12980 280 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 TAS2R19P59542 299 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 Q56UQ5 140 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 SPSB3Q6PJ21 355 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 RBPMS2Q6ZRY4 209 aaKnown RBP15.59■□□□□ 0.09
CLN3-219ENST00000565778 OR4D10Q8NGI6 311 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 OR52B4Q8NGK2 314 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 OR1P1Q8NH06 330 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 NBEAL2Q6ZNJ1 2754 aa15.59■□□□□ 0.09
CLN3-219ENST00000565778 C3orf85A0A1B0GTC6 90 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 K7EIM0 57 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 C8orf88P0DMB2 117 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 PPP5CP53041 499 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 HSPE1P61604 102 aaKnown RBP15.58■□□□□ 0.08
CLN3-219ENST00000565778 ERHP84090 104 aaKnown RBP15.58■□□□□ 0.08
CLN3-219ENST00000565778 IZUMO4Q1ZYL8 232 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 ANKRD55Q3KP44 614 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 STEAP1BQ6NZ63 245 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 LINC00322Q6ZN03 302 aaPredicted RBP15.58■□□□□ 0.08
CLN3-219ENST00000565778 MISP3Q96FF7 219 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 TP53RKQ96S44 253 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 ATP6V0BQ99437 205 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 CHRDL1Q9BU40 450 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 WFDC10AQ9H1F0 79 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 SRD5A3Q9H8P0 318 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 COPZ2Q9P299 210 aa15.58■□□□□ 0.08
CLN3-219ENST00000565778 ATG12O94817 140 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 CD74P04233 296 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 PRCDQ00LT1 54 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 SP6Q3SY56 376 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 CASC10Q5T4H9 136 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 OR2C3Q8N628 320 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 CCDC71LQ8N9Z2 235 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 C20orf24Q9BUV8 137 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 STAB2Q8WWQ8 2551 aa15.57■□□□□ 0.08
CLN3-219ENST00000565778 TRAV25A0A0B4J276 109 aa15.56■□□□□ 0.08
CLN3-219ENST00000565778 RBMY1BA6NDE4 496 aaKnown RBP15.56■□□□□ 0.08
CLN3-219ENST00000565778 RBMY1EA6NEQ0 496 aaKnown RBP15.56■□□□□ 0.08
CLN3-219ENST00000565778 RBMY1DP0C7P1 496 aaKnown RBP15.56■□□□□ 0.08
CLN3-219ENST00000565778 MRPS10P82664 201 aaKnown RBP15.56■□□□□ 0.08
CLN3-219ENST00000565778 TRIM16LQ309B1 348 aa15.56■□□□□ 0.08
CLN3-219ENST00000565778 MARCH1Q8TCQ1 289 aa15.56■□□□□ 0.08
CLN3-219ENST00000565778 RAB2BQ8WUD1 216 aa15.56■□□□□ 0.08
CLN3-219ENST00000565778 TMEM190Q8WZ59 177 aa15.56■□□□□ 0.08
CLN3-219ENST00000565778 DIRAS2Q96HU8 199 aa15.56■□□□□ 0.08
CLN3-219ENST00000565778 GAR1Q9NY12 217 aaKnown RBP15.56■□□□□ 0.08
CLN3-219ENST00000565778 NDUFA4O00483 81 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 IGKV1-5P01602 117 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 AKR1C2P52895 323 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 TMBIM6P55061 237 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 MFAP4P55083 255 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 SSBP1Q04837 148 aaKnown RBP15.55■□□□□ 0.08
CLN3-219ENST00000565778 IL18Q14116 193 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 SPINK9Q5DT21 86 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 OR13C8Q8NGS7 320 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 ISOC1Q96CN7 298 aa15.55■□□□□ 0.08
CLN3-219ENST00000565778 DAZ1Q9NQZ3 744 aaKnown RBP15.55■□□□□ 0.08
CLN3-219ENST00000565778 KMT2CQ8NEZ4 4911 aaKnown RBP15.54■□□□□ 0.08
CLN3-219ENST00000565778 IGHV3OR16-8A0A075B7F1 116 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 F8W735 103 aaPredicted RBP15.54■□□□□ 0.08
CLN3-219ENST00000565778 NUPL2O15504 423 aaKnown RBP15.54■□□□□ 0.08
CLN3-219ENST00000565778 IFNA17P01571 189 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 CTSGP08311 255 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 ADMP35318 185 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 MEF2DQ14814 521 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 PINX1Q96BK5 328 aaKnown RBP15.54■□□□□ 0.08
CLN3-219ENST00000565778 HIPK2Q9H2X6 1198 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 C5orf66Q9H5L9 145 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 EDA2RQ9HAV5 297 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 RETNQ9HD89 108 aa15.54■□□□□ 0.08
CLN3-219ENST00000565778 A0A0B4J293 547 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 DISC1C4P0D8 188 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 I3L2K1 104 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 ZNF207O43670 478 aaKnown RBP15.53■□□□□ 0.08
CLN3-219ENST00000565778 MT-CO2P00403 227 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 IGHV3-48P01763 117 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 CTSDP07339 412 aaPredicted RBP15.53■□□□□ 0.08
CLN3-219ENST00000565778 SNCAP37840 140 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 LAMTOR1Q6IAA8 161 aa15.53■□□□□ 0.08
CLN3-219ENST00000565778 FAAP20Q6NZ36 180 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms