RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 GINS3Q9BRX5 216 aa5.26□□□□□ -1.57
VPS4A-203ENST00000564399 FLG2Q5D862 2391 aaPredicted RBP5.25□□□□□ -1.57
VPS4A-203ENST00000564399 IGHV3-66A0A0C4DH42 116 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 METTL21EPA6NDL7 271 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 KNCNA6PVL3 124 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 F8W735 103 aaPredicted RBP5.25□□□□□ -1.57
VPS4A-203ENST00000564399 K7EIM0 57 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 ARL6IP5O75915 188 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 NQO2P16083 231 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 C4BPBP20851 252 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 DTYMKP23919 212 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 TAS2R31P59538 309 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 EIF4EBP1Q13541 118 aaPredicted RBP5.25□□□□□ -1.57
VPS4A-203ENST00000564399 RNF212Q495C1 297 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 UBE2UQ5VVX9 321 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 TRPT1Q86TN4 253 aaKnown RBP5.25□□□□□ -1.57
VPS4A-203ENST00000564399 C10orf67Q8IYJ2 551 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 FAM24BQ8N5W8 94 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 BPIFB6Q8NFQ5 453 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 OR1L8Q8NGR8 309 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 SECTM1Q8WVN6 248 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 ST8SIA2Q92186 375 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 ZNF414Q96IQ9 312 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 OR10C1Q96KK4 312 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 MND1Q9BWT6 205 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 TMEM140Q9NV12 185 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 PSORS1C1Q9UIG5 152 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 ELF5Q9UKW6 265 aaPredicted RBP5.25□□□□□ -1.57
VPS4A-203ENST00000564399 F11RQ9Y624 299 aaKnown RBP5.25□□□□□ -1.57
VPS4A-203ENST00000564399 V9GY05 133 aa5.25□□□□□ -1.57
VPS4A-203ENST00000564399 TRAV2A0A0B4J234 112 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 TEX50A0A1B0GTY4 177 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 SULT1C2O00338 296 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 RBFOX2O43251 390 aaKnown RBP eCLIP5.24□□□□□ -1.57
VPS4A-203ENST00000564399 HPRT1P00492 218 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 ZNF688P0C7X2 276 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 HTN3P15516 51 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 CALRP27797 417 aaKnown RBP5.24□□□□□ -1.57
VPS4A-203ENST00000564399 SMCPP49901 116 aaPredicted RBP5.24□□□□□ -1.57
VPS4A-203ENST00000564399 EMP1P54849 157 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 MFAP4P55083 255 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 CATR1Q13166 79 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 ARL6IP1Q15041 203 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 RCN1Q15293 331 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 SPHARQ15513 63 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 CDNFQ49AH0 187 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 ACTL10Q5JWF8 245 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 CNIH2Q6PI25 160 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 ZNF773Q6PK81 442 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 PQLC1Q8N2U9 271 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 LILRB2Q8N423 598 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 DHRSXQ8N5I4 330 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 STXBP6Q8NFX7 210 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 UFD1Q92890 307 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 LSM10Q969L4 123 aaKnown RBP5.24□□□□□ -1.57
VPS4A-203ENST00000564399 SLC25A46Q96AG3 418 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 MISP3Q96FF7 219 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 FAM210BQ96KR6 192 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 NXF2Q9GZY0 626 aaKnown RBP5.24□□□□□ -1.57
VPS4A-203ENST00000564399 RNF167Q9H6Y7 350 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 CCL28Q9NRJ3 127 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 TMED3Q9Y3Q3 217 aa5.24□□□□□ -1.57
VPS4A-203ENST00000564399 SRRM2Q9UQ35 2752 aaKnown RBP5.23□□□□□ -1.57
VPS4A-203ENST00000564399 GNG7O60262 68 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 IGHV3-48P01763 117 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 APOHP02749 345 aaPredicted RBP5.23□□□□□ -1.57
VPS4A-203ENST00000564399 SPART-AS1P0CW21 52 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 HSMCR30P0CW71 290 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 ERVK-16P61578 105 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 RPS25P62851 125 aaKnown RBP5.23□□□□□ -1.57
VPS4A-203ENST00000564399 POU2AF1Q16633 256 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 TOMM20LQ6UXN7 152 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 TMEM91Q6ZNR0 172 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 ZNF367Q7RTV3 350 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 C8orf59Q8N0T1 100 aaPredicted RBP5.23□□□□□ -1.57
VPS4A-203ENST00000564399 CSNK1G2-AS1Q8NCQ2 148 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 OR51H1Q8NH63 302 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 C1QTNF4Q9BXJ3 329 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 ATG5Q9H1Y0 275 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 DCSTAMPQ9H295 470 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 TMEM231Q9H6L2 316 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 VSIRQ9H7M9 311 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 S100A14Q9HCY8 104 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 NDUFA4L2Q9NRX3 87 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 PLCXD1Q9NUJ7 323 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 XCL2Q9UBD3 114 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 NSG2Q9Y328 171 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 OR51B2Q9Y5P1 312 aa5.23□□□□□ -1.57
VPS4A-203ENST00000564399 EPM2AB3EWF7 344 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 PTGES3LE9PB15 166 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 K7EQG2 157 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 SNAPC5O75971 98 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 FGF2P09038 288 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 INAFM2P0DMQ5 153 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 RAB6AP20340 208 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 FCGR2CP31995 323 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 GNG2P59768 71 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 NUTF2P61970 127 aaKnown RBP5.22□□□□□ -1.57
VPS4A-203ENST00000564399 TRAM1Q15629 374 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 AADACL3Q5VUY0 350 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms