RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 C11orf1Q9H5F2 150 aa10.15□□□□□ -0.78
CLK3-214ENST00000564096 ZNF469Q96JG9 3925 aaPredicted RBP10.14□□□□□ -0.79
CLK3-214ENST00000564096 A0A0D9SG52 128 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 NPIPB5A8MRT5 1133 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 IGHG2P01859 326 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 AMY1AP04745 511 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 RNASE1P07998 156 aaKnown RBP10.14□□□□□ -0.79
CLK3-214ENST00000564096 EWSR1Q01844 656 aaKnown RBP eCLIP10.14□□□□□ -0.793e-7■□□□□ 11.1
CLK3-214ENST00000564096 WT1-ASQ06250 92 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 TMEM252Q8N6L7 170 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 OR11H4Q8NGC9 324 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 PINX1Q96BK5 328 aaKnown RBP10.14□□□□□ -0.79
CLK3-214ENST00000564096 FAM103A1Q9BTL3 118 aaKnown RBP10.14□□□□□ -0.79
CLK3-214ENST00000564096 GON7Q9BXV9 100 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 ZNF580Q9UK33 172 aa10.14□□□□□ -0.79
CLK3-214ENST00000564096 KANTRA0A1W2PQU2 76 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 FAM24AA6NFZ4 105 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 SH2D7A6NKC9 451 aaPredicted RBP10.13□□□□□ -0.79
CLK3-214ENST00000564096 CGB1A6NKQ9 187 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 TCF21O43680 179 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 TMEM50AO95807 157 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 IFNA4P05014 189 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 IGF1P05019 195 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 CRYBA1P05813 215 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 HKR1P10072 659 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 DEFA4P12838 97 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 AREGP15514 252 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 CRIP2P52943 208 aaPredicted RBP10.13□□□□□ -0.79
CLK3-214ENST00000564096 AP2S1P53680 142 aaPredicted RBP10.13□□□□□ -0.79
CLK3-214ENST00000564096 PAX9P55771 341 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 C2orf83Q53S99 150 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 UNQ5815/PRO19632Q6UWF5 114 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 TMEM14EPQ6UXP3 125 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 LILRB2Q8N423 598 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 OR10W1Q8NGF6 305 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 OR1P1Q8NH06 330 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 DUX5Q96PT3 197 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 OR4C12Q96R67 309 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 HSPB11Q9Y547 144 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 ACANP16112 2415 aa10.13□□□□□ -0.79
CLK3-214ENST00000564096 TLN2Q9Y4G6 2542 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 TRAV41A0A0B4J266 112 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 A0A1B0GW64 132 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 IGSF23A1L1A6 192 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 RNF222A6NCQ9 220 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 C15orf62A8K5M9 175 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 E7EUB6 86 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 REG1AP05451 166 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 METTL15P1P0C7V9 234 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 APELAP0DMC3 54 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 RNASE2P10153 161 aaKnown RBP10.12□□□□□ -0.79
CLK3-214ENST00000564096 UBA52P62987 128 aaKnown RBP10.12□□□□□ -0.79
CLK3-214ENST00000564096 BSXQ3C1V8 233 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 AKIRIN2Q53H80 203 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 STPG2Q8N412 459 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 C9orf62Q8N4C0 152 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 LFNGQ8NES3 379 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 OR10P1Q8NGE3 313 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 OR1S2Q8NGQ3 325 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 FAM110DQ8TAY7 271 aaPredicted RBP10.12□□□□□ -0.79
CLK3-214ENST00000564096 RNASEH2CQ8TDP1 164 aaKnown RBP10.12□□□□□ -0.79
CLK3-214ENST00000564096 ARL6Q9H0F7 186 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 THYN1Q9P016 225 aa10.12□□□□□ -0.79
CLK3-214ENST00000564096 F11RQ9Y624 299 aaKnown RBP10.12□□□□□ -0.79
CLK3-214ENST00000564096 RPS10-NUDT3A0A1W2PQS6 291 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 TAAR5O14804 337 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 FBXO24O75426 580 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 DFFBO76075 338 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 CRYGCP07315 174 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 HIST1H1BP16401 226 aaKnown RBP10.11□□□□□ -0.79
CLK3-214ENST00000564096 CTRB1P17538 263 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 S100A11P31949 105 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 NKX2-5P52952 324 aaPredicted RBP10.11□□□□□ -0.79
CLK3-214ENST00000564096 BLCAPP62952 87 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 EXOSC2Q13868 293 aaKnown RBP10.11□□□□□ -0.79
CLK3-214ENST00000564096 ZNF266Q14584 549 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 CTRB2Q6GPI1 263 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 OR8G2PQ6IF36 304 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 ETFRF1Q6IPR1 90 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 ETV3LQ6ZN32 361 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 KCNRGQ8N5I3 272 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 TTC9CQ8N5M4 171 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 TMEM217Q8N7C4 229 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 OR2T6Q8NHC8 308 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 P2RX4Q99571 388 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 ARPC5LQ9BPX5 153 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 ESM1Q9NQ30 184 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 FBXO7Q9Y3I1 522 aa10.11□□□□□ -0.79
CLK3-214ENST00000564096 FAM181BA6NEQ2 426 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 H3BUA1 57 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 BCL2L11O43521 198 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 CST7O76096 145 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 OPRK1P41145 380 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 SLC35B1P78383 322 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 SLC38A11Q08AI6 406 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 OR5C1Q8NGR4 320 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 ATP5SQ99766 215 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 GGACTQ9BVM4 153 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 ZNF702PQ9H963 129 aa10.1□□□□□ -0.79
CLK3-214ENST00000564096 FBXL17Q9UF56 701 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms