RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FBXL7Q9UJT9 491 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 ROS1P08922 2347 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 PLCE1Q9P212 2302 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 TRGV10A0A0A0MS01 117 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 SRRM5B3KS81 715 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 TNFSF13O75888 250 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 TNFSF10P50591 281 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 NHLRC2Q8NBF2 726 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 DDB2Q92466 427 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 ZNRD1Q9P1U0 126 aa10.84□□□□□ -0.67
CLN3-210ENST00000563874 CCL11P51671 97 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 HSPE1P61604 102 aaKnown RBP10.83□□□□□ -0.68
CLN3-210ENST00000563874 SRSF6Q13247 344 aaKnown RBP10.83□□□□□ -0.68
CLN3-210ENST00000563874 MRPL54Q6P161 138 aaKnown RBP10.83□□□□□ -0.68
CLN3-210ENST00000563874 SIGLECL1Q8N7X8 197 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 RCHY1Q96PM5 261 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 OR2V2Q96R30 315 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 NABP2Q9BQ15 211 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 IGKV1OR2-108A0A075B7D4 117 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 SPRY3O43610 288 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 CA1P00915 261 aaPredicted RBP10.83□□□□□ -0.68
CLN3-210ENST00000563874 LINC00869P0C866 280 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 MGST1P10620 155 aaKnown RBP10.83□□□□□ -0.68
CLN3-210ENST00000563874 PMCHP20382 165 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 COMPP49747 757 aaPredicted RBP10.83□□□□□ -0.68
CLN3-210ENST00000563874 PRR20EP86478 221 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 PRR20CP86479 221 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 PRR20DP86480 221 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 PRR20BP86481 221 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 PRR20AP86496 221 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 TMEM183BQ1AE95 376 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 HES3Q5TGS1 186 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 C11orf52Q96A22 123 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 MIEN1Q9BRT3 115 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 TMEM208Q9BTX3 173 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 IDI2-AS1Q9NZ38 188 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 TRGV8A0A0C4DH27 118 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 C9JCJ5 164 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 RPLP1P05386 114 aaKnown RBP10.83□□□□□ -0.68
CLN3-210ENST00000563874 NPSP0C0P6 89 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 CD59P13987 128 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 SUMO1P63165 101 aaKnown RBP10.83□□□□□ -0.68
CLN3-210ENST00000563874 DEFB108BQ8NET1 73 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 SERTAD4Q9NUC0 356 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 TMEM14BQ9NUH8 114 aa10.83□□□□□ -0.68
CLN3-210ENST00000563874 PCNX2A6NKB5 2137 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 ODF1Q14990 250 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 ZNF503Q96F45 646 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 C20orf144Q9BQM9 153 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 TBL2Q9Y4P3 447 aaKnown RBP10.82□□□□□ -0.68
CLN3-210ENST00000563874 OR51B2Q9Y5P1 312 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 NDUFS8O00217 210 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 F2RL2O00254 374 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 TFPI2P48307 235 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 AMTP48728 403 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 ZNF83P51522 516 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 C17orf58Q2M2W7 97 aa10.82□□□□□ -0.68
CLN3-210ENST00000563874 YLPM1P49750 1951 aaKnown RBP10.81□□□□□ -0.68
CLN3-210ENST00000563874 GGTLC3B5MD39 225 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 J3KRW8 73 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 J3QR06 171 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 IGKV1-16P04430 117 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 ESDP10768 282 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 MRPS11P82912 194 aaKnown RBP10.81□□□□□ -0.68
CLN3-210ENST00000563874 DMRTA1Q5VZB9 504 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 PPP1R35Q8TAP8 253 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 CHODLQ9H9P2 273 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 PLEKHA3Q9HB20 300 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 DSCAMO60469 2012 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 BDP1A6H8Y1 2624 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 NKX2-8O15522 239 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 GPX1P07203 203 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 GUSBP1Q15486 140 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 MBNL2Q5VZF2 373 aaKnown RBP10.81□□□□□ -0.68
CLN3-210ENST00000563874 TMEM108Q6UXF1 575 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 OR9G1Q8NH87 305 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 LINC00479Q96M42 142 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 IL19Q9UHD0 177 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 FOXA2Q9Y261 457 aaPredicted RBP10.81□□□□□ -0.68
CLN3-210ENST00000563874 PPIAL4AQ9Y536 164 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 CACNA1GO43497 2377 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 TRAV9-1A0A075B6T8 112 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 DIRC3C9JPN6 131 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 AREGP15514 252 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 Q0VG73 95 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 TIGITQ495A1 244 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 FAM19A2Q8N3H0 131 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 WFDC12Q8WWY7 111 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 NEUROG1Q92886 237 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 GNB1LQ9BYB4 327 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 SLC45A2Q9UMX9 530 aa10.81□□□□□ -0.68
CLN3-210ENST00000563874 ZNF253O75346 499 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 MMP23AO75900 390 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 ZNF883P0CG24 379 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 SRIP30626 198 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 RBX1P62877 108 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 PRR31Q5SQ13 230 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 FDCSPQ8NFU4 85 aa10.8□□□□□ -0.68
CLN3-210ENST00000563874 SNRNP40Q96DI7 357 aaKnown RBP10.8□□□□□ -0.68
CLN3-210ENST00000563874 SFXN3Q9BWM7 321 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms