RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TMEM68Q96MH6 324 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 RANGRFQ9HD47 186 aaPredicted RBP12.99□□□□□ -0.33
VPS4A-202ENST00000562754 HEYLQ9NQ87 328 aaPredicted RBP12.99□□□□□ -0.33
VPS4A-202ENST00000562754 DMRT1Q9Y5R6 373 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 ATRQ13535 2644 aa12.98□□□□□ -0.33
VPS4A-202ENST00000562754 DEDDO75618 318 aa12.98□□□□□ -0.33
VPS4A-202ENST00000562754 MPC2O95563 127 aa12.98□□□□□ -0.33
VPS4A-202ENST00000562754 RNASE2P10153 161 aaKnown RBP12.98□□□□□ -0.33
VPS4A-202ENST00000562754 MFAP2P55001 183 aa12.98□□□□□ -0.33
VPS4A-202ENST00000562754 MRPL41Q8IXM3 137 aaKnown RBP12.98□□□□□ -0.33
VPS4A-202ENST00000562754 ZNF114Q8NC26 417 aa12.98□□□□□ -0.33
VPS4A-202ENST00000562754 WIPF2Q8TF74 440 aaPredicted RBP12.98□□□□□ -0.33
VPS4A-202ENST00000562754 OR4C12Q96R67 309 aa12.98□□□□□ -0.33
VPS4A-202ENST00000562754 P2RX4Q99571 388 aa12.98□□□□□ -0.33
VPS4A-202ENST00000562754 OR5AC2Q9NZP5 309 aa12.98□□□□□ -0.33
VPS4A-202ENST00000562754 CLPSL1A2RUU4 121 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 PSMB11A5LHX3 300 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 H3BP45 60 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 SMLR1H3BR10 107 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 PRH1P02810 166 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 ERHP84090 104 aaKnown RBP12.97□□□□□ -0.33
VPS4A-202ENST00000562754 ZNF329Q86UD4 541 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 KLHDC1Q8N7A1 406 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 SLC24A4Q8NFF2 622 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 OR2T35Q8NGX2 323 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 SMIM8Q96KF7 97 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 CIB3Q96Q77 187 aaPredicted RBP12.97□□□□□ -0.33
VPS4A-202ENST00000562754 RAB40CQ96S21 281 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 RNF126Q9BV68 326 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 HIPK2Q9H2X6 1198 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 MBD2Q9UBB5 411 aa12.97□□□□□ -0.33
VPS4A-202ENST00000562754 F11RQ9Y624 299 aaKnown RBP12.97□□□□□ -0.33
VPS4A-202ENST00000562754 C15orf62A8K5M9 175 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 CCNKO75909 580 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 IGLV1-40P01703 118 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 IGHG4P01861 327 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 PROK1P58294 105 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 DEFA5Q01523 94 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 CD300CQ08708 224 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 AKAP14Q86UN6 197 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 FANCD2OSQ96PS1 177 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 ZFP57Q9NU63 452 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 RNF114Q9Y508 228 aa12.96□□□□□ -0.33
VPS4A-202ENST00000562754 IGLV11-55A0A075B6I3 123 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 L7N2F9 121 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 LYL1P12980 280 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 NPY1RP25929 384 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 SNCAP37840 140 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 HTR2BP41595 481 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 TAS2R30P59541 319 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 VAMP2P63027 116 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 KLK9Q2XQG4 91 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 C2orf83Q53S99 150 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 PVRIGQ6DKI7 326 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 PRSS54Q6PEW0 395 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 LCNL1Q6ZST4 164 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 OR1P1Q8NH06 330 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 GON7Q9BXV9 100 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 PSENENQ9NZ42 101 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 KLK9Q9UKQ9 250 aa12.95□□□□□ -0.34
VPS4A-202ENST00000562754 TMEM89A2RUT3 159 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 TSC22D2O75157 780 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 LY86O95711 162 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 IFNA10P01566 189 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 PET100P0DJ07 73 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 PSMB8P28062 276 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 SLC35B1P78383 322 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 SPANXN5Q5MJ07 72 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 CENPVQ7Z7K6 275 aaPredicted RBP12.94□□□□□ -0.34
VPS4A-202ENST00000562754 KLK15Q9H2R5 256 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 U3KQ87 197 aa12.94□□□□□ -0.34
VPS4A-202ENST00000562754 TRBV9A0A0B4J1U6 114 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 FAM24AA6NFZ4 105 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 E5RGE8 158 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 H3BUA1 57 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 BRI3O95415 125 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 RLN2P04090 185 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 PF4V1P10720 104 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 DEFA4P12838 97 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 PVALBP20472 110 aaPredicted RBP12.93□□□□□ -0.34
VPS4A-202ENST00000562754 RPL23AP62750 156 aaKnown RBP12.93□□□□□ -0.34
VPS4A-202ENST00000562754 FOXE3Q13461 319 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 TMEM14EPQ6UXP3 125 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 TCTE3Q8IZS6 198 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 MS4A10Q96PG2 267 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 NEURL2Q9BR09 285 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 C19orf24Q9BVV8 132 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 ZNF355PQ9NSJ1 428 aa12.93□□□□□ -0.34
VPS4A-202ENST00000562754 LYRM2Q9NU23 88 aaPredicted RBP12.93□□□□□ -0.34
VPS4A-202ENST00000562754 STRAPQ9Y3F4 350 aaKnown RBP12.93□□□□□ -0.34
VPS4A-202ENST00000562754 A0A1B0GUS0 222 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 IGSF23A1L1A6 192 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 HAX1O00165 279 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 OR2J3O76001 311 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 NDUFB8O95169 186 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 TRGV3P03979 118 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 SLC25A4P12235 298 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 RHOGP84095 191 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 FGL1Q08830 312 aa12.92□□□□□ -0.34
VPS4A-202ENST00000562754 FOXL1Q12952 345 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms