RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 SPIN2BQ9BPZ2 258 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 TXNDC17Q9BRA2 123 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 RNF126Q9BV68 326 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 KRTAP4-3Q9BYR4 195 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 IMUPQ9GZP8 106 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 CHST6Q9GZX3 395 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 FNDC4Q9H6D8 234 aaPredicted RBP2.7□□□□□ -1.98
VPS35-203ENST00000562420 ZNF442Q9H7R0 627 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 HES4Q9HCC6 221 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ENY2Q9NPA8 101 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 PRTFDC1Q9NRG1 225 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 CTSZQ9UBR2 303 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ZNF257Q9Y2Q1 563 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 POLDIP2Q9Y2S7 368 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 MED31Q9Y3C7 131 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 PXMP4Q9Y6I8 212 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 ZNF780BQ9Y6R6 833 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 GBF1Q92538 1859 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 LY75O60449 1722 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 COL24A1Q17RW2 1714 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 PLXND1Q9Y4D7 1925 aa2.7□□□□□ -1.98
VPS35-203ENST00000562420 DAPL1A0PJW8 107 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 C9JQL5 133 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 F5H5K5 113 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 H0YJW9 148 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 SAP18O00422 153 aaKnown RBP2.69□□□□□ -1.98
VPS35-203ENST00000562420 KBTBD11O94819 623 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 IGHV3-13P01766 116 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 OR5AL1P0C617 328 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 LIMS3P0CW19 117 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 LIMS4P0CW20 117 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 IFITM1P13164 125 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 ZNF43P17038 809 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 LOXP28300 417 aaPredicted RBP2.69□□□□□ -1.98
VPS35-203ENST00000562420 DUTP33316 252 aaKnown RBP2.69□□□□□ -1.98
VPS35-203ENST00000562420 OPRM1P35372 400 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 HINT1P49773 126 aaPredicted RBP2.69□□□□□ -1.98
VPS35-203ENST00000562420 EMP1P54849 157 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 MRPS6P82932 125 aaKnown RBP2.69□□□□□ -1.98
VPS35-203ENST00000562420 IL15RAQ13261 267 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 CCL15Q16663 113 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 TBC1D28Q2M2D7 210 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 OR4C11Q6IEV9 310 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 ZNF880Q6PDB4 577 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 SLC25A34Q6PIV7 304 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 SPEM1Q8N4L4 309 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 ZNF615Q8N8J6 731 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 ZFP41Q8N8Y5 198 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 APCDD1LQ8NCL9 501 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 ZNF740Q8NDX6 193 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 OR5H2Q8NGV7 314 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 OR10J6PQ8NGY7 276 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 OR10AG1Q8NH19 301 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 OR9G1Q8NH87 305 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 C11orf45Q8TAV5 145 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 RTN4IP1Q8WWV3 396 aaPredicted RBP2.69□□□□□ -1.98
VPS35-203ENST00000562420 OR5P3Q8WZ94 311 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 C11orf52Q96A22 123 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 RAB37Q96AX2 223 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 CNRIP1Q96F85 164 aaPredicted RBP2.69□□□□□ -1.98
VPS35-203ENST00000562420 ATXN7L3BQ96GX2 97 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 MCEEQ96PE7 176 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 GPR21Q99679 349 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 RARRES2Q99969 163 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 MRPL45Q9BRJ2 306 aaKnown RBP2.69□□□□□ -1.98
VPS35-203ENST00000562420 DCTN5Q9BTE1 182 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 COMMD5Q9GZQ3 224 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 TMEM191AQ9H0A3 160 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 SH2D2AQ9NP31 389 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 AMBNQ9NP70 447 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 CMC2Q9NRP2 79 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 HRASLS2Q9NWW9 162 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 FZR1Q9UM11 496 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 NSG2Q9Y328 171 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 MPC1Q9Y5U8 109 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 SLX4Q8IY92 1834 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 PATJQ8NI35 1801 aa2.69□□□□□ -1.98
VPS35-203ENST00000562420 ZSWIM8A7E2V4 1837 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 BTAF1O14981 1849 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 A0A0A6YYD5 115 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TRAV5A0A0B4J249 113 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 A0A0B4J2E0 115 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 A0A1B0GX12 115 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TSPAN11A1L157 253 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 OR4C46A6NHA9 309 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 H3BMG7 143 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 PLPP1O14494 284 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TNFSF11O14788 317 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 PITX3O75364 302 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 ZNF682O95780 498 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 OR2H2O95918 312 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 CRISP2P16562 243 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 GATA2P23769 480 aaPredicted RBP2.68□□□□□ -1.98
VPS35-203ENST00000562420 RPS12P25398 132 aaKnown RBP2.68□□□□□ -1.98
VPS35-203ENST00000562420 S100A3P33764 101 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 HRH1P35367 487 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 GALR1P47211 349 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 SLC25A1P53007 311 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 MTPNP58546 118 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 RND3P61587 244 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms