RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 CLCF1Q9UBD9 225 aa11.47□□□□□ -0.57
VPS9D1-202ENST00000561976 WDFY4Q6ZS81 3184 aa11.47□□□□□ -0.57
VPS9D1-202ENST00000561976 COL27A1Q8IZC6 1860 aaPredicted RBP11.47□□□□□ -0.57
VPS9D1-202ENST00000561976 SAA2-SAA4A0A096LPE2 208 aa11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 SRRM5B3KS81 715 aa11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 J3QR06 171 aa11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 SAA2P0DJI9 122 aaPredicted RBP11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 NTF3P20783 257 aa11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 ZNF83P51522 516 aa11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 MMDQ15546 238 aa11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 COX19Q49B96 90 aa11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 LYG1Q8N1E2 194 aa11.46□□□□□ -0.57
VPS9D1-202ENST00000561976 AMY1AP04745 511 aa11.46□□□□□ -0.58
VPS9D1-202ENST00000561976 CT45A1Q5HYN5 189 aa11.46□□□□□ -0.58
VPS9D1-202ENST00000561976 C1orf210Q8IVY1 113 aa11.46□□□□□ -0.58
VPS9D1-202ENST00000561976 FAM19A2Q8N3H0 131 aa11.46□□□□□ -0.58
VPS9D1-202ENST00000561976 Q8N976 141 aa11.46□□□□□ -0.58
VPS9D1-202ENST00000561976 CT45A3Q8NHU0 189 aa11.46□□□□□ -0.58
VPS9D1-202ENST00000561976 ARL2-SNX15V9GYD0 113 aa11.46□□□□□ -0.58
VPS9D1-202ENST00000561976 COL6A3P12111 3177 aa11.46□□□□□ -0.58
VPS9D1-202ENST00000561976 IGHV2OR16-5A0A0B4J2B6 119 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 GGTLC3B5MD39 225 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 ZNF324O75467 553 aaPredicted RBP11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 LINC00614P0C842 121 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 TAS2R45P59539 299 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 MRPS11P82912 194 aaKnown RBP11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 DMRTA1Q5VZB9 504 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 BMPR1BO00238 502 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 ISLRO14498 428 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 HLA-DQA1P01909 254 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 CRYABP02511 175 aaKnown RBP11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 Q6ZN92 141 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 C11orf42Q8N5U0 333 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 GCSAMQ8N6F7 178 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 NHLRC2Q8NBF2 726 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 ZNF503Q96F45 646 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 WNT10AQ9GZT5 417 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 SLC35D1Q9NTN3 355 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 UQCR10Q9UDW1 63 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 CDC42EP3Q9UKI2 254 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 PPIAL4AQ9Y536 164 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 HEATR1Q9H583 2144 aaKnown RBP11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 CA1P00915 261 aaPredicted RBP11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 APCSP02743 223 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 GNG10P50151 68 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 MBNL2Q5VZF2 373 aaKnown RBP11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 MOGAT3Q86VF5 341 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 BORCS7Q96B45 105 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 ARRDC1-AS1Q9H2J1 176 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 ZNF331Q9NQX6 463 aaPredicted RBP11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 TUBG2Q9NRH3 451 aa11.45□□□□□ -0.58
VPS9D1-202ENST00000561976 C3orf79P0CE67 100 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 USF1P22415 310 aaPredicted RBP11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 CHRNB4P30926 498 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 KIR2DL2P43627 348 aaPredicted RBP11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 HNRNPA3P51991 378 aaKnown RBP11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 CR1LQ2VPA4 569 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 SLC35E1Q96K37 410 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 PRNDQ9UKY0 176 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 IGKV1OR2-108A0A075B7D4 117 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 IGHV1-18A0A0C4DH31 117 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 DPRXA6NFQ7 191 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 SIAH2O43255 324 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 CTRLP40313 264 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 MLANAQ16655 118 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 OR2V2Q96R30 315 aa11.44□□□□□ -0.58
VPS9D1-202ENST00000561976 TRAV34A0A0B4J273 112 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 FNDC10F2Z333 226 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 C17orf58Q2M2W7 97 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 SPRNQ5BIV9 151 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 FAM201AQ5SY85 155 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 ASPHD1Q5U4P2 390 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 ATOH7Q8N100 152 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 C9orf106Q8NAJ2 232 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 SSBP3Q9BWW4 388 aaPredicted RBP11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 SMIM27A0A1W2PRY6 76 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 PPOXP50336 477 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 PRRX1P54821 245 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 C1orf162Q8NEQ5 155 aaPredicted RBP11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 OR9G1Q8NH87 305 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 TSKUQ8WUA8 353 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 ZFP30Q9Y2G7 519 aa11.43□□□□□ -0.58
VPS9D1-202ENST00000561976 HYPMO75409 117 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 IGLV2-8P01709 118 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 IGLC2P0DOY2 106 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 IGLC3P0DOY3 106 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 NIT1Q86X76 327 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 ZNF439Q8NDP4 499 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 ADTRPQ96IZ2 230 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 RAB9BQ9NP90 201 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 IZUMO1RA6ND01 250 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 SPRY3O43610 288 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 TCF21O43680 179 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 C8orf88P0DMB2 117 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 PRCDQ00LT1 54 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 VHLLQ6RSH7 139 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 DNAJC4Q9NNZ3 241 aa11.42□□□□□ -0.58
VPS9D1-202ENST00000561976 TMEM265A0A087WTH1 108 aa11.41□□□□□ -0.58
VPS9D1-202ENST00000561976 KBTBD11-OT1A0A1B0GTJ5 212 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms