RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RNASE2P10153 161 aaKnown RBP6.07□□□□□ -1.44
VPS39-204ENST00000561818 FHITP49789 147 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 ELLP55199 621 aaPredicted RBP6.07□□□□□ -1.44
VPS39-204ENST00000561818 RPL19P84098 196 aaKnown RBP6.07□□□□□ -1.44
VPS39-204ENST00000561818 ARL16Q0P5N6 197 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 EBI3Q14213 229 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 PSG5Q15238 335 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 MMDQ15546 238 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 FAM209BQ5JX69 171 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 SPSB3Q6PJ21 355 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 CLEC9AQ6UXN8 241 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 C16orf82Q7Z2V1 217 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 VKORC1L1Q8N0U8 176 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 TMEM116Q8NCL8 245 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 CLRN3Q8NCR9 226 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 BSCL2Q96G97 398 aaPredicted RBP6.07□□□□□ -1.44
VPS39-204ENST00000561818 UHRF2Q96PU4 802 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 CTDSP1Q9GZU7 261 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 ZNF430Q9H8G1 570 aaPredicted RBP6.07□□□□□ -1.44
VPS39-204ENST00000561818 TMEM242Q9NWH2 141 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 TECRQ9NZ01 308 aaKnown RBP6.07□□□□□ -1.44
VPS39-204ENST00000561818 GNG13Q9P2W3 67 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 METTL1Q9UBP6 276 aaKnown RBP6.07□□□□□ -1.44
VPS39-204ENST00000561818 PXMP4Q9Y6I8 212 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 ABCA4P78363 2273 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 ATRXP46100 2492 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 SPTBN1Q01082 2364 aaKnown RBP6.07□□□□□ -1.44
VPS39-204ENST00000561818 DOPEY1Q5JWR5 2465 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 MALRD1Q5VYJ5 2156 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 NBASA2RRP1 2371 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 TRAV20A0A0B4J274 112 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 MEX3AA1L020 520 aaKnown RBP6.06□□□□□ -1.44
VPS39-204ENST00000561818 SRRM4A7MD48 611 aaKnown RBP6.06□□□□□ -1.44
VPS39-204ENST00000561818 NPIPB5A8MRT5 1133 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 FAM157AC9JC47 383 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 J3QLI3 93 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 PPP1R2P9O14990 202 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 AGPAT2O15120 278 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 FCN3O75636 299 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 CNIH1O95406 144 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 CRYGBP07316 175 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 COX7A1P24310 79 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 CDKN1AP38936 164 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 REG1BP48304 166 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 ATP5J2P56134 94 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 ARF6P62330 175 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 PRR20EP86478 221 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 PRR20CP86479 221 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 PRR20DP86480 221 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 PRR20BP86481 221 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 PRR20AP86496 221 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 TNXAQ16473 311 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 SP5Q6BEB4 398 aaPredicted RBP6.06□□□□□ -1.44
VPS39-204ENST00000561818 FAM53AQ6NSI3 398 aaPredicted RBP6.06□□□□□ -1.44
VPS39-204ENST00000561818 ZNF562Q6V9R5 426 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 VMO1Q7Z5L0 202 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 LRRC75A-AS1Q8N1F1 130 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 RPP25LQ8N5L8 163 aaKnown RBP6.06□□□□□ -1.44
VPS39-204ENST00000561818 STPG3Q8N7X2 389 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 C15orf54Q8N8G6 183 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 THAP8Q8NA92 274 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 RAB24Q969Q5 203 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 TVP23CQ96ET8 276 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 ZNF48Q96MX3 618 aaPredicted RBP6.06□□□□□ -1.44
VPS39-204ENST00000561818 TRGV9Q99603 122 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 BPESC1Q9GZL8 116 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 SIRPDQ9H106 197 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 NARFLQ9H6Q4 476 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 BEX4Q9NWD9 120 aaPredicted RBP6.06□□□□□ -1.44
VPS39-204ENST00000561818 PITPNC1Q9UKF7 332 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 F11RQ9Y624 299 aaKnown RBP6.06□□□□□ -1.44
VPS39-204ENST00000561818 DOCK11Q5JSL3 2073 aa6.06□□□□□ -1.44
VPS39-204ENST00000561818 LAMA5O15230 3695 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 TCRBV4S1A1TA0A5B7 111 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 ZFP92A6NM28 416 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 B4DSR2 109 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 LYNX1G3V0Z9 82 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 TIMM23O14925 209 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 C1QL1O75973 258 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 STAG3L2P0CL84 134 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 STAG3L3P0CL85 134 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 OR13C7P0DN81 318 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 LYNX1P0DP58 116 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 DEFA4P12838 97 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 CD99P14209 185 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 NPBWR1P48145 328 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 C5orf64Q2M2E5 130 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 LCN15Q6UWW0 184 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 CYP2G1PQ6ZSU1 146 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 Q8N7P7 452 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 C10orf105Q8TEF2 133 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 C17orf50Q8WW18 174 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 SRSF12Q8WXF0 261 aaKnown RBP6.05□□□□□ -1.44
VPS39-204ENST00000561818 MGST2Q99735 147 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 TXN2Q99757 166 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 NAT8Q9UHE5 227 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 LY96Q9Y6Y9 160 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 ADGRG4Q8IZF6 3080 aa6.05□□□□□ -1.44
VPS39-204ENST00000561818 TRAV3A0A0B4J244 114 aa6.04□□□□□ -1.44
VPS39-204ENST00000561818 IGLC7A0M8Q6 106 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms