RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ADMP35318 185 aa14.13□□□□□ -0.15
VPS35-202ENST00000561713 Q56UQ5 140 aa14.13□□□□□ -0.15
VPS35-202ENST00000561713 TBC1D26Q86UD7 250 aa14.13□□□□□ -0.15
VPS35-202ENST00000561713 OVOL2Q9BRP0 275 aa14.13□□□□□ -0.15
VPS35-202ENST00000561713 FUNDC2Q9BWH2 189 aa14.13□□□□□ -0.15
VPS35-202ENST00000561713 MRPL27Q9P0M9 148 aaKnown RBP14.13□□□□□ -0.15
VPS35-202ENST00000561713 LOC102724200A0A096LPH7 203 aaPredicted RBP14.12□□□□□ -0.15
VPS35-202ENST00000561713 M0QYG6 137 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 CYB5BO43169 146 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 IGKV1-39P01597 117 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 IGHV3-48P01763 117 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 IGKV1D-39P04432 117 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 ELK1P19419 428 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 TSPAN5P62079 268 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 PMS2P11Q13670 270 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 SPINK9Q5DT21 86 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 HSD17B13Q7Z5P4 300 aaPredicted RBP14.12□□□□□ -0.15
VPS35-202ENST00000561713 MRGPRFQ96AM1 343 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 BSCL2Q96G97 398 aaPredicted RBP14.12□□□□□ -0.15
VPS35-202ENST00000561713 ZNF414Q96IQ9 312 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 DAZ1Q9NQZ3 744 aaKnown RBP14.12□□□□□ -0.15
VPS35-202ENST00000561713 PRNDQ9UKY0 176 aa14.12□□□□□ -0.15
VPS35-202ENST00000561713 PCLOQ9Y6V0 5065 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 IGHV3-49A0A0A0MS15 119 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 TRAV25A0A0B4J276 109 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 CXorf65A6NEN9 183 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 ELLP55199 621 aaPredicted RBP14.11□□□□□ -0.15
VPS35-202ENST00000561713 IZUMO4Q1ZYL8 232 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 ANKRD55Q3KP44 614 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 ODF3L2Q3SX64 289 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 MISP3Q96FF7 219 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 TMEM14BQ9NUH8 114 aa14.11□□□□□ -0.15
VPS35-202ENST00000561713 APOA1P02647 267 aa14.1□□□□□ -0.15
VPS35-202ENST00000561713 RCVRNP35243 200 aa14.1□□□□□ -0.15
VPS35-202ENST00000561713 DEFB135Q30KP9 77 aa14.1□□□□□ -0.15
VPS35-202ENST00000561713 OR2C3Q8N628 320 aa14.1□□□□□ -0.15
VPS35-202ENST00000561713 OR5B3Q8NH48 314 aa14.1□□□□□ -0.15
VPS35-202ENST00000561713 SEC22AQ96IW7 307 aa14.1□□□□□ -0.15
VPS35-202ENST00000561713 SPAG8Q99932 426 aaPredicted RBP14.1□□□□□ -0.15
VPS35-202ENST00000561713 NAA50Q9GZZ1 169 aaKnown RBP14.1□□□□□ -0.15
VPS35-202ENST00000561713 C5orf66Q9H5L9 145 aa14.1□□□□□ -0.15
VPS35-202ENST00000561713 HECTD4Q9Y4D8 3996 aa14.1□□□□□ -0.15
VPS35-202ENST00000561713 NDUFA4O00483 81 aa14.09□□□□□ -0.15
VPS35-202ENST00000561713 PI3P19957 117 aa14.09□□□□□ -0.15
VPS35-202ENST00000561713 EWSR1Q01844 656 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS35-202ENST00000561713 TMEM56Q96MV1 263 aa14.09□□□□□ -0.15
VPS35-202ENST00000561713 TSPAN4O14817 238 aa14.08□□□□□ -0.16
VPS35-202ENST00000561713 RPL35AP18077 110 aaKnown RBP14.08□□□□□ -0.16
VPS35-202ENST00000561713 SPSB3Q6PJ21 355 aa14.08□□□□□ -0.16
VPS35-202ENST00000561713 H2BFWTQ7Z2G1 175 aa14.08□□□□□ -0.16
VPS35-202ENST00000561713 SCPEP1Q9HB40 452 aa14.08□□□□□ -0.16
VPS35-202ENST00000561713 IGKV3-7A0A075B6H7 116 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 IGHV3OR16-13A0A075B7E8 117 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 IGHV3-74A0A0B4J1X5 117 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 A0A0J9YWU9 116 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 SMIM31A0A1B0GVY4 71 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 FAM25AB3EWG3 89 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 FAM25CB3EWG5 89 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 FAM25GB3EWG6 89 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 CTSDP07339 412 aaPredicted RBP14.07□□□□□ -0.16
VPS35-202ENST00000561713 PPP5CP53041 499 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 ZNF124Q15973 351 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 SLC38A6Q8IZM9 456 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 RPP25LQ8N5L8 163 aaKnown RBP14.07□□□□□ -0.16
VPS35-202ENST00000561713 OR1P1Q8NH06 330 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 OR4A16Q8NH70 328 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 PINX1Q96BK5 328 aaKnown RBP14.07□□□□□ -0.16
VPS35-202ENST00000561713 TSC22D3Q99576 134 aa14.07□□□□□ -0.16
VPS35-202ENST00000561713 NUPR2A6NF83 97 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 I3L2K1 104 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 YIF1AO95070 293 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 MT-CO2P00403 227 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 CTSGP08311 255 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 SMIM18P0DKX4 95 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 PGAM2P15259 253 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 S100GP29377 79 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 TFPI2P48307 235 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 PRCDQ00LT1 54 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 RNF2Q99496 336 aa14.06□□□□□ -0.16
VPS35-202ENST00000561713 LAMTOR1Q6IAA8 161 aa14.05□□□□□ -0.16
VPS35-202ENST00000561713 LPCAT3Q6P1A2 487 aa14.05□□□□□ -0.16
VPS35-202ENST00000561713 CEMP1Q6PRD7 247 aaPredicted RBP14.05□□□□□ -0.16
VPS35-202ENST00000561713 APRG1Q8IVJ8 170 aa14.05□□□□□ -0.16
VPS35-202ENST00000561713 CADM3Q8N126 398 aa14.05□□□□□ -0.16
VPS35-202ENST00000561713 OR52I2Q8NH67 350 aa14.05□□□□□ -0.16
VPS35-202ENST00000561713 FKBP11Q9NYL4 201 aa14.05□□□□□ -0.16
VPS35-202ENST00000561713 KLK11Q9UBX7 282 aa14.05□□□□□ -0.16
VPS35-202ENST00000561713 IGHV7-4-1A0A0J9YVY3 117 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 OR4C46A6NHA9 309 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 NUPL2O15504 423 aaKnown RBP14.04□□□□□ -0.16
VPS35-202ENST00000561713 IGKV1-5P01602 117 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 APOC4P55056 127 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 UCP3P55916 312 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 LYG2Q86SG7 212 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 OR4D10Q8NGI6 311 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 TP53RKQ96S44 253 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 EXTL2Q9UBQ6 330 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 SMPXQ9UHP9 88 aa14.04□□□□□ -0.16
VPS35-202ENST00000561713 VPS13DQ5THJ4 4388 aa14.03□□□□□ -0.16
VPS35-202ENST00000561713 C15orf62A8K5M9 175 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms