RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 A0A0U1RQK1 487 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 ZNF705EA8MWA4 302 aaPredicted RBP16.97■□□□□ 0.31
CLN3-209ENST00000561689 MAS1LP35410 378 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 ERHP84090 104 aaKnown RBP16.97■□□□□ 0.31
CLN3-209ENST00000561689 KLF17Q5JT82 389 aaPredicted RBP16.97■□□□□ 0.31
CLN3-209ENST00000561689 OR2G3Q8NGZ4 309 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 RSG1Q9BU20 258 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 WDR61Q9GZS3 305 aaKnown RBP16.97■□□□□ 0.31
CLN3-209ENST00000561689 PLXNB1O43157 2135 aa16.96■□□□□ 0.31
CLN3-209ENST00000561689 PRSS46E5RG02 174 aa16.96■□□□□ 0.31
CLN3-209ENST00000561689 REG1AP05451 166 aa16.96■□□□□ 0.31
CLN3-209ENST00000561689 OR13C7P0DN81 318 aa16.96■□□□□ 0.31
CLN3-209ENST00000561689 SULT1A2P50226 295 aa16.96■□□□□ 0.31
CLN3-209ENST00000561689 TMEM182Q6ZP80 229 aaPredicted RBP16.96■□□□□ 0.31
CLN3-209ENST00000561689 GNPNAT1Q96EK6 184 aaPredicted RBP16.96■□□□□ 0.31
CLN3-209ENST00000561689 HECTD1Q9ULT8 2610 aa16.96■□□□□ 0.31
CLN3-209ENST00000561689 ITPR2Q14571 2701 aa16.96■□□□□ 0.31
CLN3-209ENST00000561689 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.95■□□□□ 0.37e-9■■□□□ 13.5
CLN3-209ENST00000561689 RNASE2P10153 161 aaKnown RBP16.95■□□□□ 0.3
CLN3-209ENST00000561689 C5orf64Q2M2E5 130 aa16.95■□□□□ 0.3
CLN3-209ENST00000561689 BSXQ3C1V8 233 aa16.95■□□□□ 0.3
CLN3-209ENST00000561689 WFDC11Q8NEX6 87 aa16.95■□□□□ 0.3
CLN3-209ENST00000561689 INS-IGF2F8WCM5 200 aa16.95■□□□□ 0.3
CLN3-209ENST00000561689 VWC2Q2TAL6 325 aa16.95■□□□□ 0.3
CLN3-209ENST00000561689 TAF15Q92804 592 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLN3-209ENST00000561689 PDZD2O15018 2839 aa16.95■□□□□ 0.3
CLN3-209ENST00000561689 CCDC168Q8NDH2 2452 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 IGLC7A0M8Q6 106 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 SMCO3A2RU48 225 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 KRBOX1C9JBD0 128 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 SCAF4O95104 1147 aaKnown RBP16.94■□□□□ 0.3
CLN3-209ENST00000561689 CNIH1O95406 144 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 AREGP15514 252 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 FHITP49789 147 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 C2orf83Q53S99 150 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 SRSF12Q8WXF0 261 aaKnown RBP16.94■□□□□ 0.3
CLN3-209ENST00000561689 FBXO7Q9Y3I1 522 aa16.94■□□□□ 0.3
CLN3-209ENST00000561689 PRRC2AP48634 2157 aaKnown RBP16.94■□□□□ 0.3
CLN3-209ENST00000561689 FAM96BQ9Y3D0 163 aa16.93■□□□□ 0.3
CLN3-209ENST00000561689 FGF7P21781 194 aa16.93■□□□□ 0.3
CLN3-209ENST00000561689 PARD6GQ9BYG4 376 aaPredicted RBP16.93■□□□□ 0.3
CLN3-209ENST00000561689 CREBBPQ92793 2442 aa16.92■□□□□ 0.3
CLN3-209ENST00000561689 TEX22C9J3V5 150 aa16.92■□□□□ 0.3
CLN3-209ENST00000561689 PRH1P02810 166 aa16.92■□□□□ 0.3
CLN3-209ENST00000561689 P2RX4Q99571 388 aa16.92■□□□□ 0.3
CLN3-209ENST00000561689 J3QLI3 93 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 FXYD3Q14802 87 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 ARSJQ5FYB0 599 aaPredicted RBP16.91■□□□□ 0.3
CLN3-209ENST00000561689 C19orf35Q6ZS72 473 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 BPIFCQ8NFQ6 507 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 SSMEM1Q8WWF3 244 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 MARC2Q969Z3 335 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 GGACTQ9BVM4 153 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 ZFHX3Q15911 3703 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 ATP5IP56385 69 aaPredicted RBP16.91■□□□□ 0.3
CLN3-209ENST00000561689 DLK1P80370 383 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 MLANAQ16655 118 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 PXDC1Q5TGL8 231 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 BTNL8Q6UX41 500 aa16.91■□□□□ 0.3
CLN3-209ENST00000561689 CIARTQ8N365 385 aaPredicted RBP16.91■□□□□ 0.3
CLN3-209ENST00000561689 FAM103A1Q9BTL3 118 aaKnown RBP16.91■□□□□ 0.3
CLN3-209ENST00000561689 Q6ZRG5 221 aa16.9■□□□□ 0.3
CLN3-209ENST00000561689 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.9■□□□□ 0.3
CLN3-209ENST00000561689 SAT2Q96F10 170 aaPredicted RBP16.9■□□□□ 0.3
CLN3-209ENST00000561689 MEGF9Q9H1U4 602 aa16.9■□□□□ 0.3
CLN3-209ENST00000561689 MDKP21741 143 aaPredicted RBP16.89■□□□□ 0.3
CLN3-209ENST00000561689 SUB1P53999 127 aaKnown RBP eCLIP16.89■□□□□ 0.3
CLN3-209ENST00000561689 CX3CL1P78423 397 aa16.89■□□□□ 0.3
CLN3-209ENST00000561689 TREML4Q6UXN2 200 aa16.89■□□□□ 0.3
CLN3-209ENST00000561689 MRPL41Q8IXM3 137 aaKnown RBP16.89■□□□□ 0.3
CLN3-209ENST00000561689 Q8N9W7 124 aa16.89■□□□□ 0.3
CLN3-209ENST00000561689 SUN5Q8TC36 379 aa16.89■□□□□ 0.3
CLN3-209ENST00000561689 PIFOQ8TCI5 191 aa16.89■□□□□ 0.3
CLN3-209ENST00000561689 C1RLQ9NZP8 487 aa16.89■□□□□ 0.3
CLN3-209ENST00000561689 WDR83OSQ9Y284 106 aa16.89■□□□□ 0.3
CLN3-209ENST00000561689 ABCA1O95477 2261 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 CR1P17927 2039 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 NAV3Q8IVL0 2385 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 CAMLGP49069 296 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 RAB5CP51148 216 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 SRSF3P84103 164 aaKnown RBP16.89■□□□□ 0.29
CLN3-209ENST00000561689 AKR1C1Q04828 323 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 AKR1C8PQ5T2L2 129 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 TMEM219Q86XT9 240 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 FAM213BQ8TBF2 198 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 ABHD5Q8WTS1 349 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 SSX3Q99909 188 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 PSMG3Q9BT73 122 aaPredicted RBP16.89■□□□□ 0.29
CLN3-209ENST00000561689 NPCDR1Q9BY65 106 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 HRH4Q9H3N8 390 aa16.89■□□□□ 0.29
CLN3-209ENST00000561689 UMAD1C9J7I0 102 aa16.88■□□□□ 0.29
CLN3-209ENST00000561689 ZNF616Q08AN1 781 aa16.88■□□□□ 0.29
CLN3-209ENST00000561689 ZNF562Q6V9R5 426 aa16.88■□□□□ 0.29
CLN3-209ENST00000561689 ITPR3Q14573 2671 aa16.88■□□□□ 0.29
CLN3-209ENST00000561689 ELLP55199 621 aaPredicted RBP16.88■□□□□ 0.29
CLN3-209ENST00000561689 BLOC1S1P78537 153 aa16.88■□□□□ 0.29
CLN3-209ENST00000561689 CYB5R2Q6BCY4 276 aa16.88■□□□□ 0.29
CLN3-209ENST00000561689 VSIRQ9H7M9 311 aa16.88■□□□□ 0.29
CLN3-209ENST00000561689 ZNF469Q96JG9 3925 aaPredicted RBP16.88■□□□□ 0.29
CLN3-209ENST00000561689 TRIM77I1YAP6 450 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms