RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 C21orf140B9A014 251 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 PROP1O75360 226 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 TNFSF15O95150 251 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 GPR12P47775 334 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 THBS3P49746 956 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 CKS1BP61024 79 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 PSG9Q00887 426 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 MPV17L2Q567V2 206 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 RPL39P5Q59GN2 51 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 MIC13Q5XKP0 118 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 KCNIP4Q6PIL6 250 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 ABHD12Q8N2K0 398 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 SIGLECL1Q8N7X8 197 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 ZDHHC11Q9H8X9 412 aa9.37□□□□□ -0.91
CUX1-218ENST00000560541 TRBV20OR9-2A0A075B6H5 130 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 TAX1BP3O14907 124 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 Q8TCH9 128 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 LEAP2Q969E1 77 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 TP53TG3Q9ULZ0 132 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 IGHV1-69-2A0A0G2JMI3 117 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.36□□□□□ -0.91
CUX1-218ENST00000560541 M0R1X1 148 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 VWC2Q2TAL6 325 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 UTF1Q5T230 341 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 CISD2Q8N5K1 135 aaKnown RBP9.36□□□□□ -0.91
CUX1-218ENST00000560541 OR2Z1Q8NG97 314 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 SGMS2Q8NHU3 365 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 GMPPAQ96IJ6 420 aaPredicted RBP9.36□□□□□ -0.91
CUX1-218ENST00000560541 COLQQ9Y215 455 aaPredicted RBP9.36□□□□□ -0.91
CUX1-218ENST00000560541 WDR83OSQ9Y284 106 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 EP300Q09472 2414 aaPredicted RBP9.36□□□□□ -0.91
CUX1-218ENST00000560541 TET2Q6N021 2002 aaPredicted RBP9.36□□□□□ -0.91
CUX1-218ENST00000560541 IGHV3OR15-7A0A075B7D8 119 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 SCO2A0A1W2PP80 73 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 IGLC7A0M8Q6 106 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 SRP14P37108 136 aaKnown RBP9.36□□□□□ -0.91
CUX1-218ENST00000560541 LINC00310P59036 64 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 CD177Q8N6Q3 437 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 OR4A16Q8NH70 328 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 LRRC29Q8WV35 223 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 NAA38Q9BRA0 125 aaKnown RBP9.36□□□□□ -0.91
CUX1-218ENST00000560541 MS4A5Q9H3V2 200 aa9.36□□□□□ -0.91
CUX1-218ENST00000560541 G3V4G9 280 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 SPINT2O43291 252 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 ZNF207O43670 478 aaKnown RBP9.35□□□□□ -0.91
CUX1-218ENST00000560541 VENTXO95231 258 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 DUTP33316 252 aaKnown RBP9.35□□□□□ -0.91
CUX1-218ENST00000560541 PDLIM3Q53GG5 364 aaPredicted RBP9.35□□□□□ -0.91
CUX1-218ENST00000560541 TREML4Q6UXN2 200 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 C5orf17Q8NAS9 161 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 HSD17B10Q99714 261 aaKnown RBP9.35□□□□□ -0.91
CUX1-218ENST00000560541 CXXC4Q9H2H0 198 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 PRO3102Q9H379 93 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 NRN1Q9NPD7 142 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 TNCP24821 2201 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 TRAV8-6A0A0B4J262 113 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 PAFAH1B2P68402 229 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 FAM222BQ8WU58 562 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 MGST2Q99735 147 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 CNOT1A5YKK6 2376 aaKnown RBP9.35□□□□□ -0.91
CUX1-218ENST00000560541 ROS1P08922 2347 aa9.35□□□□□ -0.91
CUX1-218ENST00000560541 PPIAL4EA0A075B759 164 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 TMEM265A0A087WTH1 108 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 PPIAL4CA0A0B4J2A2 164 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 PPIAL4DF5H284 164 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 PDE6DO43924 150 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 PPIAL4FP0DN26 164 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 SPATA31B1PQ5VZV4 182 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 FER1L6-AS2Q96M78 137 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 PXMP4Q9Y6I8 212 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 PCNX2A6NKB5 2137 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 CACNA1GO43497 2377 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 C15orf65H3BRN8 121 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 NUDT3O95989 172 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 CECR9P0C854 216 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 CD99P14209 185 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 CRISP2P16562 243 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 CBLN1P23435 193 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 FAM214BQ7L5A3 538 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 Q8N976 141 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 UHRF2Q96PU4 802 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 DUSP13Q9UII6 198 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 PTPRBP23467 1997 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 TYMSP04818 313 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 ESDP10768 282 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 AMTP48728 403 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 ZNF134P52741 427 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 RPL15P61313 204 aaKnown RBP9.34□□□□□ -0.91
CUX1-218ENST00000560541 TCTEX1D1Q8N7M0 179 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 ZNRF1Q8ND25 227 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 ZNF479Q96JC4 524 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 FNDC4Q9H6D8 234 aaPredicted RBP9.34□□□□□ -0.91
CUX1-218ENST00000560541 SS18L2Q9UHA2 77 aa9.34□□□□□ -0.91
CUX1-218ENST00000560541 PLCE1Q9P212 2302 aa9.34□□□□□ -0.92
CUX1-218ENST00000560541 MUC21A0A0G2JKD1 596 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 MUC21A0A140T8X8 626 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 MDFIC2A0A1B0GVS7 189 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 SLC17A3O00476 420 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 MYOD1P15172 320 aa9.33□□□□□ -0.92
CUX1-218ENST00000560541 PRDX2P32119 198 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms