RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 C4orf3Q8WVX3 66 aa16.84■□□□□ 0.29
SNX1-206ENST00000559389 FANCD2OSQ96PS1 177 aa16.84■□□□□ 0.29
SNX1-206ENST00000559389 GNB4Q9HAV0 340 aa16.84■□□□□ 0.29
SNX1-206ENST00000559389 CACFD1Q9UGQ2 172 aa16.84■□□□□ 0.29
SNX1-206ENST00000559389 IGLV11-55A0A075B6I3 123 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 FAM223BA6NKX1 122 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 NUDT19A8MXV4 375 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 TSPAN15O95858 294 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 HOXA1P49639 335 aaPredicted RBP16.83■□□□□ 0.28
SNX1-206ENST00000559389 RHOGP84095 191 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 FAM223AQ8IWN6 122 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 ZNF114Q8NC26 417 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 OR1S1Q8NH92 325 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 GPN1Q9HCN4 374 aaPredicted RBP16.83■□□□□ 0.28
SNX1-206ENST00000559389 HSPB7Q9UBY9 170 aa16.83■□□□□ 0.28
SNX1-206ENST00000559389 F11RQ9Y624 299 aaKnown RBP16.83■□□□□ 0.28
SNX1-206ENST00000559389 MPTX1A8MV57 137 aa16.82■□□□□ 0.28
SNX1-206ENST00000559389 NXPH3O95157 252 aa16.82■□□□□ 0.28
SNX1-206ENST00000559389 IFNA21P01568 189 aa16.82■□□□□ 0.28
SNX1-206ENST00000559389 DEFA4P12838 97 aa16.82■□□□□ 0.28
SNX1-206ENST00000559389 C8orf86Q6ZUL3 223 aa16.82■□□□□ 0.28
SNX1-206ENST00000559389 C12orf45Q8N5I9 185 aaPredicted RBP16.82■□□□□ 0.28
SNX1-206ENST00000559389 NECAP1Q8NC96 275 aa16.82■□□□□ 0.28
SNX1-206ENST00000559389 DMRT1Q9Y5R6 373 aa16.82■□□□□ 0.28
SNX1-206ENST00000559389 A0A0G2JLM5 398 aa16.81■□□□□ 0.28
SNX1-206ENST00000559389 SNRPGP15A8MWD9 76 aa16.81■□□□□ 0.28
SNX1-206ENST00000559389 HIST1H1BP16401 226 aaKnown RBP16.81■□□□□ 0.28
SNX1-206ENST00000559389 TNFRSF9Q07011 255 aa16.81■□□□□ 0.28
SNX1-206ENST00000559389 RGS21Q2M5E4 152 aa16.81■□□□□ 0.28
SNX1-206ENST00000559389 OR4F17Q8NGA8 305 aa16.81■□□□□ 0.28
SNX1-206ENST00000559389 USMG5Q96IX5 58 aa16.81■□□□□ 0.28
SNX1-206ENST00000559389 OR4F4Q96R69 305 aa16.81■□□□□ 0.28
SNX1-206ENST00000559389 OR2J3O76001 311 aa16.8■□□□□ 0.28
SNX1-206ENST00000559389 LGALS1P09382 135 aaKnown RBP16.8■□□□□ 0.28
SNX1-206ENST00000559389 MFAP2P55001 183 aa16.8■□□□□ 0.28
SNX1-206ENST00000559389 ERHP84090 104 aaKnown RBP16.8■□□□□ 0.28
SNX1-206ENST00000559389 RUNX1Q01196 453 aa16.8■□□□□ 0.28
SNX1-206ENST00000559389 OR1P1Q8NH06 330 aa16.8■□□□□ 0.28
SNX1-206ENST00000559389 P2RX4Q99571 388 aa16.8■□□□□ 0.28
SNX1-206ENST00000559389 ENY2Q9NPA8 101 aa16.8■□□□□ 0.28
SNX1-206ENST00000559389 FBXL7Q9UJT9 491 aa16.8■□□□□ 0.28
SNX1-206ENST00000559389 C13orf42A0A1B0GVH6 325 aa16.79■□□□□ 0.28
SNX1-206ENST00000559389 CEBPZOSA8MTT3 80 aa16.79■□□□□ 0.28
SNX1-206ENST00000559389 FAM90A26D6RGX4 464 aa16.79■□□□□ 0.28
SNX1-206ENST00000559389 I3L521 148 aa16.79■□□□□ 0.28
SNX1-206ENST00000559389 CCSO14618 274 aa16.79■□□□□ 0.28
SNX1-206ENST00000559389 IGHV3-11P01762 117 aa16.79■□□□□ 0.28
SNX1-206ENST00000559389 ETV3LQ6ZN32 361 aa16.79■□□□□ 0.28
SNX1-206ENST00000559389 OR5B12Q96R08 314 aa16.79■□□□□ 0.28
SNX1-206ENST00000559389 C7orf66A4D0T2 115 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 CYB5BO43169 146 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 NDUFB8O95169 186 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 TATDN3Q17R31 274 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 DEFB136Q30KP8 78 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 C15orf32Q32M92 178 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 BSXQ3C1V8 233 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 PRR31Q5SQ13 230 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 C11orf87Q6NUJ2 197 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 UXS1Q8NBZ7 420 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 OR4D5Q8NGN0 318 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 OR1L6Q8NGR2 347 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 RBKSQ9H477 322 aa16.78■□□□□ 0.28
SNX1-206ENST00000559389 RNASE2P10153 161 aaKnown RBP16.77■□□□□ 0.28
SNX1-206ENST00000559389 EXOSC2Q13868 293 aaKnown RBP16.77■□□□□ 0.28
SNX1-206ENST00000559389 IAH1Q2TAA2 248 aaPredicted RBP16.77■□□□□ 0.28
SNX1-206ENST00000559389 ZNF343Q6P1L6 599 aa16.77■□□□□ 0.28
SNX1-206ENST00000559389 RAX2Q96IS3 184 aa16.77■□□□□ 0.28
SNX1-206ENST00000559389 OR10C1Q96KK4 312 aa16.77■□□□□ 0.28
SNX1-206ENST00000559389 THYN1Q9P016 225 aa16.77■□□□□ 0.28
SNX1-206ENST00000559389 SNCAP37840 140 aa16.76■□□□□ 0.27
SNX1-206ENST00000559389 ATP5G2Q06055 141 aa16.76■□□□□ 0.27
SNX1-206ENST00000559389 FHL3Q13643 280 aa16.76■□□□□ 0.27
SNX1-206ENST00000559389 OXA1LQ15070 435 aa16.76■□□□□ 0.27
SNX1-206ENST00000559389 PVRIGQ6DKI7 326 aa16.76■□□□□ 0.27
SNX1-206ENST00000559389 SLC25A24Q6NUK1 477 aa16.76■□□□□ 0.27
SNX1-206ENST00000559389 ZBTB8BQ8NAP8 495 aaPredicted RBP16.76■□□□□ 0.27
SNX1-206ENST00000559389 DTD1Q8TEA8 209 aa16.76■□□□□ 0.27
SNX1-206ENST00000559389 MFSD2BA6NFX1 497 aa16.75■□□□□ 0.27
SNX1-206ENST00000559389 MYCNOSP40205 109 aa16.75■□□□□ 0.27
SNX1-206ENST00000559389 SLC24A4Q8NFF2 622 aa16.75■□□□□ 0.27
SNX1-206ENST00000559389 DUX3Q96PT4 197 aa16.75■□□□□ 0.27
SNX1-206ENST00000559389 HIPK2Q9H2X6 1198 aa16.75■□□□□ 0.27
SNX1-206ENST00000559389 HEYLQ9NQ87 328 aaPredicted RBP16.75■□□□□ 0.27
SNX1-206ENST00000559389 ANK2Q01484 3957 aa16.74■□□□□ 0.27
SNX1-206ENST00000559389 CCL24O00175 119 aa16.74■□□□□ 0.27
SNX1-206ENST00000559389 MED6O75586 246 aa16.74■□□□□ 0.27
SNX1-206ENST00000559389 PF4P02776 101 aa16.74■□□□□ 0.27
SNX1-206ENST00000559389 HTR2BP41595 481 aa16.74■□□□□ 0.27
SNX1-206ENST00000559389 ID3Q02535 119 aa16.74■□□□□ 0.27
SNX1-206ENST00000559389 CCDC140Q96MF4 163 aa16.74■□□□□ 0.27
SNX1-206ENST00000559389 IGHV4OR15-8A0A075B7B6 117 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 A0A087WW49 117 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 FAM25EA8MYX2 175 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 K7EIM0 57 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 NKX2-1P43699 371 aaPredicted RBP16.73■□□□□ 0.27
SNX1-206ENST00000559389 SUB1P53999 127 aaKnown RBP eCLIP16.73■□□□□ 0.27
SNX1-206ENST00000559389 ZNF616Q08AN1 781 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 OR11H1Q8NG94 326 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 VN1R17PQ8TDU5 208 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 EEF1AKMT3Q96AZ1 226 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms