RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PRR9Q5T870 116 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 SAMD13Q5VXD3 122 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 LHFPL1Q86WI0 220 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 NIT1Q86X76 327 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 LYPD6Q86Y78 171 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 C1orf174Q8IYL3 243 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 CMTM1Q8IZ96 169 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 LRRC75A-AS1Q8N1F1 130 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 MUC15Q8N387 334 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 TCTEX1D1Q8N7M0 179 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 OR10W1Q8NGF6 305 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 OR5AK3PQ8NH89 298 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 MBD3L1Q8WWY6 194 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 FGF13Q92913 245 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 TMEM230Q96A57 120 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 GNPNAT1Q96EK6 184 aaPredicted RBP2□□□□□ -2.09
VPS13C-208ENST00000559119 COQ2Q96H96 371 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 OR10C1Q96KK4 312 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 SLC35G5Q96KT7 338 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 OR5B12Q96R08 314 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 TBX5Q99593 518 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 CDX2Q99626 313 aaPredicted RBP2□□□□□ -2.09
VPS13C-208ENST00000559119 MCHR1Q99705 422 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 RARRES2Q99969 163 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 PDCD1LG2Q9BQ51 273 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 PRSS27Q9BQR3 290 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 VAMP8Q9BV40 100 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 LINC00597Q9H2U6 94 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 PPDPFQ9H3Y8 114 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 BANF2Q9H503 90 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 CLN8Q9UBY8 286 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 MRM2Q9UI43 246 aaKnown RBP2□□□□□ -2.09
VPS13C-208ENST00000559119 RAB22AQ9UL26 194 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 SLC22A13Q9Y226 551 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 PIGLQ9Y2B2 252 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 PXMP4Q9Y6I8 212 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 URGCP-MRPS24S4R325 110 aa2□□□□□ -2.09
VPS13C-208ENST00000559119 SBF1O95248 1867 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 PLXNA1Q9UIW2 1896 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 ANKRD12Q6UB98 2062 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TRAV8-7A0A075B6U6 113 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TRAV26-1A0A087WT03 109 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 MYBPHLA2RUH7 354 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TMEM189A5PLL7 270 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 HELTA6NFD8 242 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 CPSF4LA6NMK7 179 aaKnown RBP1.99□□□□□ -2.09
VPS13C-208ENST00000559119 OR11H12B2RN74 326 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TMEM250H0YL14 139 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 SIRPB1O00241 398 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 RBFOX2O43251 390 aaKnown RBP eCLIP1.99□□□□□ -2.09
VPS13C-208ENST00000559119 CD5LO43866 347 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 OR7C2O60412 319 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 PITX3O75364 302 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 PRH1P02810 166 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 MAS1P04201 325 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 KLK1P06870 262 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 CTSDP07339 412 aaPredicted RBP1.99□□□□□ -2.09
VPS13C-208ENST00000559119 IFI6P09912 130 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 PSMB5P28074 263 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 CMPK1P30085 196 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TSPOP30536 169 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 GABRA3P34903 492 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 REG1BP48304 166 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 PRLHRP49683 370 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 LCN6P62502 163 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 SUPT4H1P63272 117 aaKnown RBP1.99□□□□□ -2.09
VPS13C-208ENST00000559119 BTN3A2P78410 334 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 CCL20P78556 96 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 EWSR1Q01844 656 aaKnown RBP eCLIP1.99□□□□□ -2.09
VPS13C-208ENST00000559119 SP4Q02446 784 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 BAXQ07812 192 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TGM3Q08188 693 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 FUT5Q11128 374 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 EIF3IQ13347 325 aaKnown RBP1.99□□□□□ -2.09
VPS13C-208ENST00000559119 VAMP3Q15836 100 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 PMCHL1Q16048 86 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 BATFQ16520 125 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 MPV17LQ2QL34 196 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 IAH1Q2TAA2 248 aaPredicted RBP1.99□□□□□ -2.09
VPS13C-208ENST00000559119 PLPPR5Q32ZL2 321 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TDRG1Q3Y452 100 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 COX19Q49B96 90 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 SPATA45Q537H7 98 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TCEAL5Q5H9L2 206 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 RAET1LQ5VY80 246 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 AGTRAPQ6RW13 159 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 C19orf35Q6ZS72 473 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 CYP2G1PQ6ZSU1 146 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 NEGR1Q7Z3B1 354 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TMEM144Q7Z5S9 345 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 TRAPPC6BQ86SZ2 158 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 DEFB125Q8N687 156 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 Q8N976 141 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 ZIC4Q8N9L1 334 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 CHST4Q8NCG5 386 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 OR11H1Q8NG94 326 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 OR5A2Q8NGI9 324 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 OR11L1Q8NGX0 322 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 OR6N2Q8NGY6 317 aa1.99□□□□□ -2.09
VPS13C-208ENST00000559119 OR2T10Q8NGZ9 312 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms