RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TMEM167BQ9NRX6 74 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 PITPNC1Q9UKF7 332 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 CACNA1HO95180 2353 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 DSCAMO60469 2012 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 DYSFO75923 2080 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 MDFIC2A0A1B0GVS7 189 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 GGCTO75223 188 aaKnown RBP5.94□□□□□ -1.46
VPS13C-206ENST00000558338 GHRHP01286 108 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 TYMSP04818 313 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 FABP1P07148 127 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 USF1P22415 310 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-206ENST00000558338 GCHFRP30047 84 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 TAS2R45P59539 299 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 CCL8P80075 99 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 C1orf229Q6ZS94 237 aaPredicted RBP5.94□□□□□ -1.46
VPS13C-206ENST00000558338 TMEM144Q7Z5S9 345 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 PNKDQ8N490 385 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 OR2T10Q8NGZ9 312 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 ZNF596Q8TC21 504 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 TMEM170AQ8WVE7 144 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 TMEM186Q96B77 213 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 ACY3Q96HD9 319 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 HARBI1Q96MB7 349 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 RNF2Q99496 336 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 PCGF1Q9BSM1 259 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 HINT2Q9BX68 163 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 PATZ1Q9HBE1 687 aaKnown RBP5.94□□□□□ -1.46
VPS13C-206ENST00000558338 DYNLRB1Q9NP97 96 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 TMEM106BQ9NUM4 274 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 SLC45A2Q9UMX9 530 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 LY96Q9Y6Y9 160 aa5.94□□□□□ -1.46
VPS13C-206ENST00000558338 TRAV9-1A0A075B6T8 112 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 DLL1O00548 723 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 SAA1P0DJI8 122 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-206ENST00000558338 AREGP15514 252 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 ATP5G3P48201 142 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 UBE2G2P60604 165 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 GNB1P62873 340 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 CTAG1AP78358 180 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 ERHP84090 104 aaKnown RBP5.93□□□□□ -1.46
VPS13C-206ENST00000558338 EFNB3Q15768 340 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 GCSAMLQ5JQS6 135 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 LINC01551Q86U37 167 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 HIST3H2BBQ8N257 126 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 Q8NA96 180 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 OR10X1Q8NGY0 326 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 CACNG8Q8WXS5 425 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 RND1Q92730 232 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 FRZBQ92765 325 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 C11orf52Q96A22 123 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 COMMD5Q9GZQ3 224 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 KAAG1Q9UBP8 84 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 CACNA1DQ01668 2161 aa5.93□□□□□ -1.46
VPS13C-206ENST00000558338 TET2Q6N021 2002 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-206ENST00000558338 DOCK11Q5JSL3 2073 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 DIDO1Q9BTC0 2240 aaKnown RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 TEX50A0A1B0GTY4 177 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 C9JCJ5 164 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 H0YJW9 148 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 PHOX2AO14813 284 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 NDUFB4O95168 129 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 CD3EP07766 207 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 GPX4P36969 197 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 ZNF137PP52743 207 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 SUB1P53999 127 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 PQLC2Q6ZP29 291 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 C22orf34Q6ZV56 151 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 NECAP1Q8NC96 275 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 OR5AN1Q8NGI8 311 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 OR4C13Q8NGP0 309 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 ABHD5Q8WTS1 349 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 SSMEM1Q8WWF3 244 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 CFHR4Q92496 578 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 FLYWCH2Q96CP2 140 aaKnown RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 MRPL32Q9BYC8 188 aaKnown RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 MRPL20Q9BYC9 149 aaKnown RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 TECRQ9NZ01 308 aaKnown RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 FUT9Q9Y231 359 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 A0A1W2PPQ1 181 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 K7ENP7 123 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 MMP23AO75900 390 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 IGKV1-16P04430 117 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 RNASE2P10153 161 aaKnown RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 IGFBP2P18065 325 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 MC5RP33032 325 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 RPL8P62917 257 aaKnown RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 RPL19P84098 196 aaKnown RBP5.92□□□□□ -1.46
VPS13C-206ENST00000558338 FOXL1Q12952 345 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 TBR1Q16650 682 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 HLA-DRB5Q30154 266 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 VMA21Q3ZAQ7 101 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 ACTL10Q5JWF8 245 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 UTF1Q5T230 341 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 TMEM200BQ69YZ2 307 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 SPACA3Q8IXA5 215 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 TMEM183AQ8IXX5 376 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 OR4X1Q8NH49 305 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 OR9G1Q8NH87 305 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 TMEM167AQ8TBQ9 72 aa5.92□□□□□ -1.46
VPS13C-206ENST00000558338 RNASEH2CQ8TDP1 164 aaKnown RBP5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms