RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PRR20EP86478 221 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 PRR20CP86479 221 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 PRR20DP86480 221 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 PRR20BP86481 221 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 PRR20AP86496 221 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 FOXL1Q12952 345 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 DOLPP1Q86YN1 238 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 MISP3Q96FF7 219 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 TP53TG5Q9Y2B4 290 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 RHOBP62745 196 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 SSBP2P81877 361 aaPredicted RBP10.51□□□□□ -0.73
LDLR-207ENST00000558013 ZNF90Q03938 601 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 PRB3Q04118 309 aaPredicted RBP10.51□□□□□ -0.73
LDLR-207ENST00000558013 REC114Q7Z4M0 266 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 LHFPL4Q7Z7J7 247 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 TP53TG3Q9ULZ0 132 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 CUL9Q8IWT3 2517 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 TEX50A0A1B0GTY4 177 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 OR10J1P30954 320 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 CCKARP32238 428 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 FXYD3Q14802 87 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 KRTCAP3Q53RY4 240 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 C10orf55Q5SWW7 151 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 NABP2Q9BQ15 211 aa10.51□□□□□ -0.73
LDLR-207ENST00000558013 RNASE7Q9H1E1 156 aaKnown RBP10.51□□□□□ -0.73
LDLR-207ENST00000558013 TRAV5A0A0B4J249 113 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 SAA1P0DJI8 122 aaPredicted RBP10.5□□□□□ -0.73
LDLR-207ENST00000558013 CD99P14209 185 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 FAM169BQ8N8A8 192 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 OR2T6Q8NHC8 308 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 FAM222BQ8WU58 562 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 NEUROG1Q92886 237 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 TMEM18Q96B42 140 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 PLEKHA3Q9HB20 300 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 SLC35D1Q9NTN3 355 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 OR7C2O60412 319 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 SCGB1D1O95968 90 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 CD40P25942 277 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 CHRNB4P30926 498 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 RPL29P47914 159 aaKnown RBP10.5□□□□□ -0.73
LDLR-207ENST00000558013 DLX1P56177 255 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 LINC00310P59036 64 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 ZNF788Q6ZQV5 615 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 NHLRC2Q8NBF2 726 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 MRPL20Q9BYC9 149 aaKnown RBP10.5□□□□□ -0.73
LDLR-207ENST00000558013 SLC45A2Q9UMX9 530 aa10.5□□□□□ -0.73
LDLR-207ENST00000558013 KIR2DS2P43631 304 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 TCL1AP56279 114 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 TDRG1Q3Y452 100 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 EAF1Q96JC9 268 aaPredicted RBP10.49□□□□□ -0.73
LDLR-207ENST00000558013 LINC00479Q96M42 142 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 CEACAM4O75871 244 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 IER3P46695 156 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 ERVFC1-1P60608 527 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 PQLC2Q6ZP29 291 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 RPUSD1Q9UJJ7 312 aaKnown RBP10.49□□□□□ -0.73
LDLR-207ENST00000558013 MUC6Q6W4X9 2439 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 ZNF318Q5VUA4 2279 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 GGTLC3B5MD39 225 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 UPK2O00526 184 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 GATA4P43694 442 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 CENPWQ5EE01 88 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 SLC25A48Q6ZT89 311 aaKnown RBP10.49□□□□□ -0.73
LDLR-207ENST00000558013 IL19Q9UHD0 177 aa10.49□□□□□ -0.73
LDLR-207ENST00000558013 ABCA4P78363 2273 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 PAX1P15863 534 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 LGALS4P56470 323 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 SUMO1P63165 101 aaKnown RBP10.48□□□□□ -0.73
LDLR-207ENST00000558013 PRR31Q5SQ13 230 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 C1orf185Q5T7R7 199 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 WFDC8Q8IUA0 241 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 OR8I2Q8N0Y5 310 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 RBMXL3Q8N7X1 1067 aaKnown RBP10.48□□□□□ -0.73
LDLR-207ENST00000558013 A8MXE2 369 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 CA1P00915 261 aaPredicted RBP10.48□□□□□ -0.73
LDLR-207ENST00000558013 PRCDQ00LT1 54 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 RAB31Q13636 194 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 KIAA1644Q3SXP7 199 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 DNLZQ5SXM8 178 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 C1orf174Q8IYL3 243 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 UHRF2Q96PU4 802 aa10.48□□□□□ -0.73
LDLR-207ENST00000558013 GCGP01275 180 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 APELAP0DMC3 54 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 USF2Q15853 346 aaPredicted RBP10.47□□□□□ -0.73
LDLR-207ENST00000558013 RUSC1-AS1Q66K80 236 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 ST6GALNAC3Q8NDV1 305 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 FKBP11Q9NYL4 201 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 HELTA6NFD8 242 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 MKRN2OSH3BPM6 223 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 LYPD2Q6UXB3 125 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 C19orf35Q6ZS72 473 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 MMD2Q8IY49 270 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 RITA1Q96K30 269 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 MRPL18Q9H0U6 180 aaKnown RBP10.47□□□□□ -0.73
LDLR-207ENST00000558013 V9GYV3 84 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 EREGO14944 169 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 SERF1AO75920 110 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 RNASE2P10153 161 aaKnown RBP10.47□□□□□ -0.73
LDLR-207ENST00000558013 SELENOVP59797 346 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 OR1L6Q8NGR2 347 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms