RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 APOA1P02647 267 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 FGF2P09038 288 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 CTF1Q16619 201 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 SLC16A13Q7RTY0 426 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 OR4D10Q8NGI6 311 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 OR1L6Q8NGR2 347 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 AIFM2Q9BRQ8 373 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 C20orf24Q9BUV8 137 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 GGTLC1Q9BX51 225 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 C21orf62Q9NYP8 219 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 MRPL27Q9P0M9 148 aaKnown RBP8.1□□□□□ -1.11
SYNE2-227ENST00000557307 KLK11Q9UBX7 282 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 DNAH10Q8IVF4 4471 aa8.1□□□□□ -1.11
SYNE2-227ENST00000557307 IGHV3OR16-13A0A075B7E8 117 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 LOC102724200A0A096LPH7 203 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-227ENST00000557307 IGHV3-74A0A0B4J1X5 117 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 A0A0G2JRQ6 117 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 I3L2K1 104 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 CTSGP08311 255 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 RCVRNP35243 200 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 PPP5CP53041 499 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 Q56UQ5 140 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 THOC7Q6I9Y2 204 aaKnown RBP8.09□□□□□ -1.11
SYNE2-227ENST00000557307 LHFPL1Q86WI0 220 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 OR52I2Q8NH67 350 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 MISP3Q96FF7 219 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 BSCL2Q96G97 398 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-227ENST00000557307 TP53RKQ96S44 253 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 MIXL1Q9H2W2 232 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 UFC1Q9Y3C8 167 aa8.09□□□□□ -1.11
SYNE2-227ENST00000557307 NDUFA4O00483 81 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 TSPAN4O14817 238 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 SNAPC5O75971 98 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 GABARAPO95166 117 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 MT-CO2P00403 227 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 APOHP02749 345 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-227ENST00000557307 CD3DP04234 171 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 CTSDP07339 412 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-227ENST00000557307 P0C879 139 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 ELLP55199 621 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-227ENST00000557307 TSPAN5P62079 268 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 DEFB135Q30KP9 77 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 FAAP20Q6NZ36 180 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 RBPMS2Q6ZRY4 209 aaKnown RBP8.08□□□□□ -1.12
SYNE2-227ENST00000557307 APRG1Q8IVJ8 170 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 CMTM1Q8IZ96 169 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 OR2C3Q8N628 320 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 BORCS5Q969J3 196 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 MARC2Q969Z3 335 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 RNF2Q99496 336 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 C5orf66Q9H5L9 145 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 VCX3AQ9NNX9 186 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 DAZ1Q9NQZ3 744 aaKnown RBP8.08□□□□□ -1.12
SYNE2-227ENST00000557307 THYN1Q9P016 225 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 MRPL36Q9P0J6 103 aaKnown RBP8.08□□□□□ -1.12
SYNE2-227ENST00000557307 PRNDQ9UKY0 176 aa8.08□□□□□ -1.12
SYNE2-227ENST00000557307 VPS13DQ5THJ4 4388 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 IGKV3-7A0A075B6H7 116 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 TRAV25A0A0B4J276 109 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 A0A0J9YWU9 116 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 RPL35AP18077 110 aaKnown RBP8.07□□□□□ -1.12
SYNE2-227ENST00000557307 FCGR2BP31994 310 aaPredicted RBP8.07□□□□□ -1.12
SYNE2-227ENST00000557307 PRCDQ00LT1 54 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 PMS2P11Q13670 270 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 SLC38A6Q8IZM9 456 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 CADM3Q8N126 398 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 LILRB2Q8N423 598 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 OR1P1Q8NH06 330 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 OR5B3Q8NH48 314 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 PINX1Q96BK5 328 aaKnown RBP8.07□□□□□ -1.12
SYNE2-227ENST00000557307 ABHD1Q96SE0 405 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 SPAG8Q99932 426 aaPredicted RBP8.07□□□□□ -1.12
SYNE2-227ENST00000557307 SCPEP1Q9HB40 452 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 EXTL2Q9UBQ6 330 aa8.07□□□□□ -1.12
SYNE2-227ENST00000557307 A0A0B4J293 547 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 FAM25AB3EWG3 89 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 FAM25CB3EWG5 89 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 FAM25GB3EWG6 89 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 CHEK1O14757 476 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 TFPI2P48307 235 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 UCP3P55916 312 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 SP6Q3SY56 376 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 GPR107Q5VW38 600 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 SPSB3Q6PJ21 355 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 H2BFWTQ7Z2G1 175 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 HSD17B13Q7Z5P4 300 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-227ENST00000557307 FAM24BQ8N5W8 94 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 ZNF114Q8NC26 417 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 OR4A16Q8NH70 328 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 IL17DQ8TAD2 202 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 TMEM56Q96MV1 263 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 CMTM3Q96MX0 182 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 SMPXQ9UHP9 88 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 AGRNO00468 2067 aa8.06□□□□□ -1.12
SYNE2-227ENST00000557307 IGHV3-66A0A0C4DH42 116 aa8.05□□□□□ -1.12
SYNE2-227ENST00000557307 IGHV7-4-1A0A0J9YVY3 117 aa8.05□□□□□ -1.12
SYNE2-227ENST00000557307 K7EMT4 169 aa8.05□□□□□ -1.12
SYNE2-227ENST00000557307 NUPL2O15504 423 aaKnown RBP8.05□□□□□ -1.12
SYNE2-227ENST00000557307 ST8SIA3O43173 380 aa8.05□□□□□ -1.12
SYNE2-227ENST00000557307 PGAM2P15259 253 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms