RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	RPP25L	Q8N5L8	163 aa	Known RBP	4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	LYPD6B	Q8NI32	183 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	IFI27L2	Q9H2X8	130 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	NGB	Q9NPG2	151 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	METRN	Q9UJH8	293 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	CKAP5	Q14008	2032 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	TDGF1	P13385	188 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	TNFRSF1A	P19438	455 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	IGHV1-2	P23083	117 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	FOXG1	P55316	489 aa	Predicted RBP	4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZNF788	Q6ZQV5	615 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	GGN	Q86UU5	652 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	TSKU	Q8WUA8	353 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	NPIPB3	Q92617	1050 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	SMIM12	Q96EX1	92 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	C1orf147	Q96MC9	270 aa	Predicted RBP	4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	LINC00470	Q9BZP3	86 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005		Q9H3A6	140 aa		4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	SEPSECS	Q9HD40	501 aa	Known RBP	4.15	□□□□□ -1.74
SYNE2-223	ENST00000557005	IGHV3-66	A0A0C4DH42	116 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKV1-6	A0A0C4DH72	117 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	C15orf61	A6NNL5	157 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005		A8MWL6	223 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005		F5H697	171 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	MGST3	O14880	152 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	LINC00271	P0C7V0	271 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	CTSS	P25774	331 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	FCGR2B	P31994	310 aa	Predicted RBP	4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR10AG1	Q8NH19	301 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	MRPL20	Q9BYC9	149 aa	Known RBP	4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	JKAMP	Q9P055	326 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	LHX2	P50458	406 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	FOXL1	Q12952	345 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF418	Q8TF45	676 aa	Predicted RBP	4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	NUDT11	Q96G61	164 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005		A0A087X0K7	114 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF716	A6NP11	495 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	NDUFA3	O95167	84 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	FAM53A	Q6NSI3	398 aa	Predicted RBP	4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005		Q6P435	159 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	SCGB1D4	Q6XE38	83 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	PPP1R32	Q7Z5V6	425 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	TMEM160	Q9NX00	188 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	SPCS1	Q9Y6A9	102 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	TRPM6	Q9BX84	2022 aa		4.15	□□□□□ -1.75
SYNE2-223	ENST00000557005	LINC00473	A8K010	186 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	FOXI3	A8MTJ6	420 aa	Predicted RBP	4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	C3orf79	P0CE67	100 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	LEP	P41159	167 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	SAPCD1	Q5SSQ6	148 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF114	Q8NC26	417 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR10W1	Q8NGF6	305 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	VSTM2A	Q8TAG5	236 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	TIMD4	Q96H15	378 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	FAM90A27P	A6NNH2	459 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	PPIAL4D	F5H284	164 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	SAA1	P0DJI8	122 aa	Predicted RBP	4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005		Q0VFX4	171 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005		Q6ZVH6	145 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF329	Q86UD4	541 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	HAPLN4	Q86UW8	402 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	C1orf210	Q8IVY1	113 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	RNF115	Q9Y4L5	304 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	SFTPC	P11686	197 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	S100A4	P26447	101 aa	Known RBP	4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	NTF4	P34130	210 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	CCL8	P80075	99 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	ECSCR	Q19T08	205 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	GFRAL	Q6UXV0	394 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	WDR31	Q8NA23	367 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	ORAOV1	Q8WV07	137 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	PRELID3A	Q96N28	172 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	SLC25A2	Q9BXI2	301 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	MAP1LC3A	Q9H492	121 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	CHODL	Q9H9P2	273 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	PILRB	Q9UKJ0	227 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	IQCF6	A8MYZ5	107 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005		K7EN84	100 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	RBPJ	Q06330	500 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	SRSF9	Q13242	221 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	MORN2	Q502X0	79 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	ASCL5	Q7RTU5	278 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	NUP35	Q8NFH5	326 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	CHRNA10	Q9GZZ6	450 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	SPRR3	Q9UBC9	169 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	LRRK1	Q38SD2	2015 aa		4.14	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKV1D-33	P01593	117 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKV1-33	P01594	117 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	TSPO	P30536	169 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	C1orf185	Q5T7R7	199 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	TMEM14EP	Q6UXP3	125 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	PNKD	Q8N490	385 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	CD177	Q8N6Q3	437 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	TEX45	Q8NA69	505 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	DEFB124	Q8NES8	71 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	CDX2	Q99626	313 aa	Predicted RBP	4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	GGTLC1	Q9BX51	225 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	KLK15	Q9H2R5	256 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	LSM4	Q9Y4Z0	139 aa	Known RBP	4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	TCF20	Q9UGU0	1960 aa	Known RBP	4.13	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms