RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 LYG2Q86SG7 212 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 FAM223AQ8IWN6 122 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 LINC00482Q8N8I6 264 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 OR52B4Q8NGK2 314 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 OR1N2Q8NGR9 330 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 ENKURQ8TC29 256 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-225ENST00000556798 FBXL7Q9UJT9 491 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 S4R3C0 116 aa13.52□□□□□ -0.25
SHMT2-225ENST00000556798 IGLV11-55A0A075B6I3 123 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 ANKRD34BA5PLL1 514 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 SULT1A3P0DMM9 295 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 SULT1A4P0DMN0 295 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 MFAP2P55001 183 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 ATP5G2Q06055 141 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 EXOSC2Q13868 293 aaKnown RBP13.51□□□□□ -0.25
SHMT2-225ENST00000556798 C15orf32Q32M92 178 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 LRTM2Q8N967 370 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 NECAP1Q8NC96 275 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 USMG5Q96IX5 58 aa13.51□□□□□ -0.25
SHMT2-225ENST00000556798 NOTCH3Q9UM47 2321 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 DUXBA0A1W2PPF3 345 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 TRBV12-3P01733 135 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 IGHV3-23P01764 117 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 HOXB5P09067 269 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 H2AFB2P0C5Z0 115 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 CD33P20138 364 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 HOXA1P49639 335 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-225ENST00000556798 ZNF616Q08AN1 781 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 FHL3Q13643 280 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 SMCO1Q147U7 214 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 NRARPQ7Z6K4 114 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 OR2C3Q8N628 320 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 DPF1Q92782 380 aa13.5□□□□□ -0.25
SHMT2-225ENST00000556798 F11RQ9Y624 299 aaKnown RBP13.5□□□□□ -0.25
SHMT2-225ENST00000556798 MFSD2BA6NFX1 497 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 HIST1H1BP16401 226 aaKnown RBP13.49□□□□□ -0.25
SHMT2-225ENST00000556798 SLURP1P55000 103 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 DEFA1P59665 94 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 DEFA3P59666 94 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 AARDQ4LEZ3 155 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 SLC25A24Q6NUK1 477 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 ZNF343Q6P1L6 599 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 COQ8AQ8NI60 647 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 SEC22CQ9BRL7 303 aa13.49□□□□□ -0.25
SHMT2-225ENST00000556798 PIGBOS1A0A0B4J2F0 54 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 LINC01619G3V211 115 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 ADAP1O75689 374 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 DUS4LO95620 317 aaKnown RBP13.48□□□□□ -0.25
SHMT2-225ENST00000556798 HSPB1P04792 205 aaKnown RBP13.48□□□□□ -0.25
SHMT2-225ENST00000556798 SPCS3P61009 180 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 ERHP84090 104 aaKnown RBP13.48□□□□□ -0.25
SHMT2-225ENST00000556798 KLK9Q2XQG4 91 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 GGNBP1Q5YKI7 109 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 C11orf87Q6NUJ2 197 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 OR52E5Q8NH55 327 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 OR1S1Q8NH92 325 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 ENY2Q9NPA8 101 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 KLK9Q9UKQ9 250 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 TMED3Q9Y3Q3 217 aa13.48□□□□□ -0.25
SHMT2-225ENST00000556798 IGHV3-21A0A0B4J1V1 117 aa13.47□□□□□ -0.25
SHMT2-225ENST00000556798 CEBPZOSA8MTT3 80 aa13.47□□□□□ -0.25
SHMT2-225ENST00000556798 OR8U8P0C7N1 319 aa13.47□□□□□ -0.25
SHMT2-225ENST00000556798 IGLL1P15814 213 aa13.47□□□□□ -0.25
SHMT2-225ENST00000556798 ZNF114Q8NC26 417 aa13.47□□□□□ -0.25
SHMT2-225ENST00000556798 CCDC140Q96MF4 163 aa13.47□□□□□ -0.25
SHMT2-225ENST00000556798 PEF1Q9UBV8 284 aaKnown RBP13.47□□□□□ -0.25
SHMT2-225ENST00000556798 A0A1B0GU03 582 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 CYB5BO43169 146 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 C1QL4Q86Z23 238 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 WFDC9Q8NEX5 89 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 OR1P1Q8NH06 330 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 MITD1Q8WV92 249 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 EEF1AKMT3Q96AZ1 226 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 MISP3Q96FF7 219 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 RANGRFQ9HD47 186 aaPredicted RBP13.46□□□□□ -0.25
SHMT2-225ENST00000556798 THYN1Q9P016 225 aa13.46□□□□□ -0.25
SHMT2-225ENST00000556798 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.45□□□□□ -0.26
SHMT2-225ENST00000556798 MPTX1A8MV57 137 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 PPP5D1E7EU14 171 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 INS-IGF2F8WCM5 200 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 G3V4G9 280 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 PITX3O75364 302 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 HOXD3P31249 432 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-225ENST00000556798 SNCAP37840 140 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 TNFRSF9Q07011 255 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 PDLIM3Q53GG5 364 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-225ENST00000556798 OXLD1Q5BKU9 147 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 DUSP18Q8NEJ0 188 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 ZNF431Q8TF32 576 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-225ENST00000556798 DCUN1D4Q92564 292 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 DLX4Q92988 240 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-225ENST00000556798 RBKSQ9H477 322 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 HEYLQ9NQ87 328 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-225ENST00000556798 HSPB7Q9UBY9 170 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 NOTCH1P46531 2555 aa13.45□□□□□ -0.26
SHMT2-225ENST00000556798 FBN3Q75N90 2809 aa13.44□□□□□ -0.26
SHMT2-225ENST00000556798 BMPR1BO00238 502 aa13.44□□□□□ -0.26
SHMT2-225ENST00000556798 RNASE2P10153 161 aaKnown RBP13.44□□□□□ -0.26
SHMT2-225ENST00000556798 SPNP16150 400 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms