RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 RBKSQ9H477 322 aa10.96□□□□□ -0.65
VIPAS39-208ENST00000556412 HSPB7Q9UBY9 170 aa10.96□□□□□ -0.65
VIPAS39-208ENST00000556412 CACFD1Q9UGQ2 172 aa10.96□□□□□ -0.65
VIPAS39-208ENST00000556412 NSUN5P1Q3KNT7 163 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 DTD1Q8TEA8 209 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 OR5B12Q96R08 314 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 CITED1Q99966 193 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 SLA2Q9H6Q3 261 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 MGAT4CQ9UBM8 478 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 NUDT19A8MXV4 375 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 WRBO00258 174 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 OR2J3O76001 311 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 CRYGCP07315 174 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 IAPPP10997 89 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 NKX2-1P43699 371 aaPredicted RBP10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 RHOGP84095 191 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 CD83Q01151 205 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 SLC25A24Q6NUK1 477 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 SHISA2Q6UWI4 295 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 OR2C3Q8N628 320 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 OR4D5Q8NGN0 318 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 HIPK2Q9H2X6 1198 aa10.95□□□□□ -0.66
VIPAS39-208ENST00000556412 H3BUA1 57 aa10.94□□□□□ -0.66
VIPAS39-208ENST00000556412 IGHV3-11P01762 117 aa10.94□□□□□ -0.66
VIPAS39-208ENST00000556412 C2orf50Q96LR7 162 aa10.94□□□□□ -0.66
VIPAS39-208ENST00000556412 P2RX4Q99571 388 aa10.94□□□□□ -0.66
VIPAS39-208ENST00000556412 MED28Q9H204 178 aa10.94□□□□□ -0.66
VIPAS39-208ENST00000556412 TSSC4Q9Y5U2 329 aaPredicted RBP10.94□□□□□ -0.66
VIPAS39-208ENST00000556412 F11RQ9Y624 299 aaKnown RBP10.94□□□□□ -0.66
VIPAS39-208ENST00000556412 FAM90A26D6RGX4 464 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 CYB5BO43169 146 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 MED6O75586 246 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 POLR2GP62487 172 aaKnown RBP eCLIP10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 PDLIM3Q53GG5 364 aaPredicted RBP10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 C18orf65Q6ZTR6 163 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 KLHL30-AS1Q8NEE0 82 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 MISP3Q96FF7 219 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 FBXL7Q9UJT9 491 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 PAIP2BQ9ULR5 123 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 SYNGR2O43760 224 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 SSSCA1O60232 199 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 IFNA10P01566 189 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 S100A10P60903 97 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 RPL23AP62750 156 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 RNF152Q8N8N0 203 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 PINX1Q96BK5 328 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 LSM5Q9Y4Y9 91 aaKnown RBP10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 S4R3C0 116 aa10.93□□□□□ -0.66
VIPAS39-208ENST00000556412 IGLV11-55A0A075B6I3 123 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 IGHV3-21A0A0B4J1V1 117 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 HIST1H1BP16401 226 aaKnown RBP10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 SUB1P53999 127 aaKnown RBP eCLIP10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 MFAP2P55001 183 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 ID3Q02535 119 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 FCN2Q15485 313 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 C15orf32Q32M92 178 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 ZNF491Q8N8L2 437 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 NECAP1Q8NC96 275 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 SLC24A4Q8NFF2 622 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 OR1P1Q8NH06 330 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 FANCD2OSQ96PS1 177 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 ZFP57Q9NU63 452 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 THYN1Q9P016 225 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 DMRT1Q9Y5R6 373 aa10.92□□□□□ -0.66
VIPAS39-208ENST00000556412 A0A0G2JLM5 398 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 FAM223BA6NKX1 122 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 INS-IGF2F8WCM5 200 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 NDUFB8O95169 186 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 MBPP02686 304 aaPredicted RBP10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 HTR2BP41595 481 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 H2BFSP57053 126 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 ATP5G2Q06055 141 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 LRRC37A5PQ49AS3 106 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 NDUFA11Q86Y39 141 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 FAM223AQ8IWN6 122 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 OR1L6Q8NGR2 347 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 UBE2E2Q96LR5 201 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 GNB4Q9HAV0 340 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 TRBV9A0A0B4J1U6 114 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 H3BP45 60 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 IGHV3-23P01764 117 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 RNASE2P10153 161 aaKnown RBP10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 CXCL3P19876 107 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 NPY1RP25929 384 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 C8orf86Q6ZUL3 223 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 ZNF114Q8NC26 417 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 MYOZ3Q8TDC0 251 aa10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 CIB3Q96Q77 187 aaPredicted RBP10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 RCL1Q9Y2P8 373 aaKnown RBP10.91□□□□□ -0.66
VIPAS39-208ENST00000556412 COL6A5A8TX70 2615 aa10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 CDX1P47902 265 aaPredicted RBP10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 RRAS2P62070 204 aaPredicted RBP10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 RAB32Q13637 225 aa10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 EXOSC2Q13868 293 aaKnown RBP10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 KIAA0141Q14154 515 aaPredicted RBP10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 DEFB136Q30KP8 78 aa10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 SPANXN5Q5MJ07 72 aa10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 WDR89Q96FK6 387 aaPredicted RBP10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 USMG5Q96IX5 58 aa10.9□□□□□ -0.66
VIPAS39-208ENST00000556412 ANKRD34BA5PLL1 514 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms