RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 WRNQ14191 1432 aaPredicted RBP eCLIP0.99□□□□□ -2.25
SCFD1-217ENST00000555953 NUP155O75694 1391 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 A0A087WUJ7 227 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 IGKV1D-43A0A0B4J1Z2 117 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 PQLC2LA1A4F0 135 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 GGT3PA6NGU5 568 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 TMEM114B3SHH9 223 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 SLC22A1O15245 554 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 ATP5HO75947 161 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST1H1TP22492 207 aaPredicted RBP0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST1H2BOP23527 126 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST1H2BBP33778 126 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 PPP1R2P41236 205 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 AKR1C3P42330 323 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 MAGEA12P43365 314 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 OMPP47874 163 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST1H2BDP58876 126 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 DEFA3P59666 94 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 RPS20P60866 119 aaKnown RBP0.99□□□□□ -2.25
SCFD1-217ENST00000555953 PSME3P61289 254 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 SNRPD2P62316 118 aaKnown RBP0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST1H2BCP62807 126 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 RPL18Q07020 188 aaKnown RBP0.99□□□□□ -2.25
SCFD1-217ENST00000555953 FADDQ13158 208 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST2H2BEQ16778 126 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.99□□□□□ -2.25
SCFD1-217ENST00000555953 IBA57Q5T440 356 aaKnown RBP0.99□□□□□ -2.25
SCFD1-217ENST00000555953 PPP1R2P3Q6NXS1 205 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 FAM173BQ6P4H8 233 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 SLC36A1Q7Z2H8 476 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 C20orf196Q8IYI0 205 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 DEFB119Q8N690 84 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 ZNF676Q8N7Q3 588 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 MBD3L1Q8WWY6 194 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST1H2BHQ93079 126 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST1H2BNQ99877 126 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 HIST1H2BMQ99879 126 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 NAA38Q9BRA0 125 aaKnown RBP0.99□□□□□ -2.25
SCFD1-217ENST00000555953 PRTFDC1Q9NRG1 225 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 CCDC88CQ9P219 2028 aa0.99□□□□□ -2.25
SCFD1-217ENST00000555953 MTUS2Q5JR59 1369 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 FAM236DA0A1B0GTK5 79 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 CLDN24A6NM45 220 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 FABP5P3A8MUU1 101 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 KPNA3O00505 521 aaPredicted RBP0.98□□□□□ -2.25
SCFD1-217ENST00000555953 ZNF737O75373 536 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 CNIH1O95406 144 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 HLA-DRB1P01911 266 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 PRM2P04554 102 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 IFNA6P05013 189 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 TRGC1P0CF51 173 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 ZNF705BP0CI00 300 aaPredicted RBP0.98□□□□□ -2.25
SCFD1-217ENST00000555953 FAM236CP0DP71 79 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 CAPZBP47756 277 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 ZNF80P51504 273 aaPredicted RBP0.98□□□□□ -2.25
SCFD1-217ENST00000555953 FXYD2P54710 66 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 AP3S2P59780 193 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 MRPS15P82914 257 aaKnown RBP0.98□□□□□ -2.25
SCFD1-217ENST00000555953 ELOBQ15370 118 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 ACOT6Q3I5F7 207 aaPredicted RBP0.98□□□□□ -2.25
SCFD1-217ENST00000555953 ARHGAP11BQ3KRB8 267 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 C7orf65Q6ZTY9 151 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 TRAPPC5Q8IUR0 188 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 CLDN22Q8N7P3 220 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 MCFD2Q8NI22 146 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 RNASE7Q9H1E1 156 aaKnown RBP0.98□□□□□ -2.25
SCFD1-217ENST00000555953 CISHQ9NSE2 258 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 VPS29Q9UBQ0 182 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 CCDC88AQ3V6T2 1871 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 NEO1Q92859 1461 aa0.98□□□□□ -2.25
SCFD1-217ENST00000555953 SDK1Q7Z5N4 2213 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 IGKV2-29A2NJV5 120 aaPredicted RBP0.97□□□□□ -2.25
SCFD1-217ENST00000555953 TRAPPC13A5PLN9 417 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 FAAHO00519 579 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 ORC5O43913 435 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 RPP14O95059 124 aaKnown RBP0.97□□□□□ -2.25
SCFD1-217ENST00000555953 IGKV1-5P01602 117 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 METTL15P1P0C7V9 234 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 ANP32AP39687 249 aaKnown RBP0.97□□□□□ -2.25
SCFD1-217ENST00000555953 RPL5P46777 297 aaKnown RBP0.97□□□□□ -2.25
SCFD1-217ENST00000555953 TAF1AQ15573 450 aaPredicted RBP0.97□□□□□ -2.25
SCFD1-217ENST00000555953 KISS1Q15726 138 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 NNATQ16517 81 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 MOGQ16653 247 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 SPANXN3Q5MJ09 141 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 AADACL3Q5VUY0 350 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 SPOPLQ6IQ16 392 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 LPCAT3Q6P1A2 487 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 RPL22L1Q6P5R6 122 aaKnown RBP0.97□□□□□ -2.25
SCFD1-217ENST00000555953 OR5B17Q8NGF7 314 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 OR13C4Q8NGS5 318 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 C11orf40Q8WZ69 217 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 TSPAN32Q96QS1 320 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 DERL1Q9BUN8 251 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 MRPL32Q9BYC8 188 aaKnown RBP0.97□□□□□ -2.25
SCFD1-217ENST00000555953 COMMD5Q9GZQ3 224 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.97□□□□□ -2.25
SCFD1-217ENST00000555953 C14orf105Q9NVL8 296 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 PRELID3BQ9Y3B1 194 aa0.97□□□□□ -2.25
SCFD1-217ENST00000555953 PIK3C2GO75747 1445 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms