RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PFN4Q8NHR9 129 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 IMP4Q96G21 291 aaKnown RBP0.51□□□□□ -2.33
SCFD1-216ENST00000555550 CNBD2Q96M20 576 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 Q96M85 177 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 NIPSNAP1Q9BPW8 284 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 DRC3Q9H069 523 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 RNASE7Q9H1E1 156 aaKnown RBP0.51□□□□□ -2.33
SCFD1-216ENST00000555550 DCSTAMPQ9H295 470 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 ZNF106Q9H2Y7 1883 aaKnown RBP0.51□□□□□ -2.33
SCFD1-216ENST00000555550 RNF122Q9H9V4 155 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 XAGE1AQ9HD64 81 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.51□□□□□ -2.33
SCFD1-216ENST00000555550 VPS29Q9UBQ0 182 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 RSL24D1Q9UHA3 163 aaKnown RBP0.51□□□□□ -2.33
SCFD1-216ENST00000555550 HHLA3Q9XRX5 114 aa0.51□□□□□ -2.33
SCFD1-216ENST00000555550 ZFHX2Q9C0A1 2572 aaPredicted RBP0.51□□□□□ -2.33
SCFD1-216ENST00000555550 DIDO1Q9BTC0 2240 aaKnown RBP0.5□□□□□ -2.33
SCFD1-216ENST00000555550 HEATR5AQ86XA9 2040 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 NUP160Q12769 1436 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 TONSLQ96HA7 1378 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 A0A0D9SEW6 157 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 A0A0J9YW62 118 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 FAM159BA6NKW6 160 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 TMEM210A6NLX4 147 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 M0R036 132 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 HCRTO43612 131 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 PGLYRP1O75594 196 aaPredicted RBP0.5□□□□□ -2.33
SCFD1-216ENST00000555550 APOEP02649 317 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 RPS17P08708 135 aaKnown RBP0.5□□□□□ -2.33
SCFD1-216ENST00000555550 SRP19P09132 144 aaKnown RBP0.5□□□□□ -2.33
SCFD1-216ENST00000555550 CST2P09228 141 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 RNASE3P12724 160 aaKnown RBP0.5□□□□□ -2.33
SCFD1-216ENST00000555550 SULT1A1P50225 295 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 SPCS3P61009 180 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 RAB14P61106 215 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 TMEM258P61165 79 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 POLR2GP62487 172 aaKnown RBP eCLIP0.5□□□□□ -2.33
SCFD1-216ENST00000555550 GLO1Q04760 184 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 SRSF6Q13247 344 aaKnown RBP0.5□□□□□ -2.33
SCFD1-216ENST00000555550 NNATQ16517 81 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 C12orf74Q32Q52 190 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 FAM27BQ5VT28 67 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 Q6ZS49 121 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 SLC35E3Q7Z769 313 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 LHFPL1Q86WI0 220 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 OR51D1Q8NGF3 324 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 OR5J2Q8NH18 312 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 TERB2Q8NHR7 220 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 ROPN1LQ96C74 230 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 ADAT3Q96EY9 351 aaPredicted RBP0.5□□□□□ -2.33
SCFD1-216ENST00000555550 IMMP2LQ96T52 175 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 MIEN1Q9BRT3 115 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 DERL1Q9BUN8 251 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 CHST6Q9GZX3 395 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 TMEM133Q9H2Q1 129 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 EFCAB1Q9HAE3 211 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 FUT9Q9Y231 359 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 FREM1Q5H8C1 2179 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 VWFP04275 2813 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 SPTBN4Q9H254 2564 aa0.5□□□□□ -2.33
SCFD1-216ENST00000555550 NCOR1O75376 2440 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 TOPBP1Q92547 1522 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 TTC21AQ8NDW8 1320 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 I3L521 148 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 ZNF737O75373 536 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 IGHV3-7P01780 117 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 IFNA6P05013 189 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 CTSDP07339 412 aaPredicted RBP0.49□□□□□ -2.33
SCFD1-216ENST00000555550 BPGMP07738 259 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 SMIM10L2AP0DMW4 78 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 SMIM10L2BP0DMW5 78 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 UCHL3P15374 230 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 HLA-DMBP28068 263 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 CDK9P50750 372 aaKnown RBP0.49□□□□□ -2.33
SCFD1-216ENST00000555550 FXYD7P58549 80 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 TAS2R20P59543 309 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 SUPT4H1P63272 117 aaKnown RBP0.49□□□□□ -2.33
SCFD1-216ENST00000555550 Q1T7F1 81 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 DEFB115Q30KQ5 88 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 TMEM97Q5BJF2 176 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 HIST2H3PS2Q5TEC6 136 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 LPCAT4Q643R3 524 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 RPP25LQ8N5L8 163 aaKnown RBP0.49□□□□□ -2.33
SCFD1-216ENST00000555550 C3orf56Q8N813 242 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 OR13C4Q8NGS5 318 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 MRPL30Q8TCC3 161 aaKnown RBP0.49□□□□□ -2.33
SCFD1-216ENST00000555550 OR52E6Q96RD3 313 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 WDR61Q9GZS3 305 aaKnown RBP0.49□□□□□ -2.33
SCFD1-216ENST00000555550 OR51V1Q9H2C8 321 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 PAQR5Q9NXK6 330 aaPredicted RBP0.49□□□□□ -2.33
SCFD1-216ENST00000555550 FBXL12Q9NXK8 326 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 IL36BQ9NZH7 164 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 TIMM22Q9Y584 194 aa0.49□□□□□ -2.33
SCFD1-216ENST00000555550 BPTFQ12830 3046 aa0.48□□□□□ -2.33
SCFD1-216ENST00000555550 DENND4CQ5VZ89 1909 aa0.48□□□□□ -2.33
SCFD1-216ENST00000555550 DOCK5Q9H7D0 1870 aa0.48□□□□□ -2.33
SCFD1-216ENST00000555550 EIF3AQ14152 1382 aaKnown RBP0.48□□□□□ -2.33
SCFD1-216ENST00000555550 TEP1Q99973 2627 aaKnown RBP0.48□□□□□ -2.33
SCFD1-216ENST00000555550 INTS1Q8N201 2190 aaKnown RBP0.48□□□□□ -2.33
SCFD1-216ENST00000555550 OR4C46A6NHA9 309 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms