RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CENPWQ5EE01 88 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ZNF766Q5HY98 468 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 MIR17HGQ75NE6 70 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 FAM214BQ7L5A3 538 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 OR4P4Q8NGL7 312 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 SLC25A40Q8TBP6 338 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 COQ2Q96H96 371 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 KCNS1Q96KK3 526 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ZNF586Q9NXT0 402 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 CDC42EP3Q9UKI2 254 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 PSG11Q9UQ72 335 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 POLDIP2Q9Y2S7 368 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 MGAQ8IWI9 3026 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 CUL9Q8IWT3 2517 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 NTN3O00634 580 aaPredicted RBP4□□□□□ -1.77
LIMA1-214ENST00000552783 TOMM40O96008 361 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 SP1P08047 785 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 OR10J4P0C629 311 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 PRRX1P54821 245 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 FOXF2Q12947 444 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 RPEL1Q2QD12 228 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 Q56UQ5 140 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 LINC00173Q6ZV60 143 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 TMEM178AQ8NBL3 297 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 ORAOV1Q8WV07 137 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 RAB1CQ92928 201 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 ZNF503Q96F45 646 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 SSBP4Q9BWG4 385 aaPredicted RBP4□□□□□ -1.77
LIMA1-214ENST00000552783 HES4Q9HCC6 221 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 C17orf112F2Z3M2 114 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 IGLV2-8P01709 118 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 KLF3P57682 345 aaPredicted RBP4□□□□□ -1.77
LIMA1-214ENST00000552783 CX3CL1P78423 397 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 HTD2P86397 168 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 MLANAQ16655 118 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 OR13A1Q8NGR1 328 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 FAM216AQ8WUB2 273 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 GALMQ96C23 342 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 GNB1LQ9BYB4 327 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 HEYLQ9NQ87 328 aaPredicted RBP4□□□□□ -1.77
LIMA1-214ENST00000552783 CLEC5AQ9NY25 188 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 ZGRF1Q86YA3 2104 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 IGKV1OR2-108A0A075B7D4 117 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 OR5B21A6NL26 309 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 VWC2LB2RUY7 222 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 J3QT63 122 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 K7EP13 123 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 NKX2-8O15522 239 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 GFRA3O60609 400 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 FCGR3BO75015 233 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 CXorf1O96002 111 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 CDKN1BP46527 198 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 RPL8P62917 257 aaKnown RBP4□□□□□ -1.77
LIMA1-214ENST00000552783 CATR1Q13166 79 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 PDLIM3Q53GG5 364 aaPredicted RBP4□□□□□ -1.77
LIMA1-214ENST00000552783 FBLN7Q53RD9 439 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 RPL39P5Q59GN2 51 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 SAPCD1Q5SSQ6 148 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 MORN5Q5VZ52 161 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 STPG3Q8N7X2 389 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 OR2Z1Q8NG97 314 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 C18orf32Q8TCD1 76 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 MPC1Q9Y5U8 109 aa4□□□□□ -1.77
LIMA1-214ENST00000552783 IGHV2-26A0A0B4J1V2 119 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 IGHV2-70DA0A0C4DH43 119 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 SPAARA0A1B0GVQ0 90 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 IGLC7A0M8Q6 106 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 OR2T8A6NH00 312 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 GGTLC3B5MD39 225 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 RAB29O14966 203 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 HAND1O96004 215 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 IGFBP2P18065 325 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 OPRK1P41145 380 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 VDAC2P45880 294 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-214ENST00000552783 ZNF134P52741 427 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 SELENOVP59797 346 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 COTL1Q14019 142 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 MPV17L2Q567V2 206 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 LDLRAD2Q5SZI1 272 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 PRAMEF5Q5TYX0 476 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 SPACA3Q8IXA5 215 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 ZNF439Q8NDP4 499 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 LEAP2Q969E1 77 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 URB1-AS1Q96HZ7 61 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 GAL3ST2Q9H3Q3 398 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 LSM4Q9Y4Z0 139 aaKnown RBP3.99□□□□□ -1.77
LIMA1-214ENST00000552783 TANC2Q9HCD6 1990 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 PSG1P11464 419 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 PSG5Q15238 335 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 TMEM249Q2WGJ8 235 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 DEFB109BQ30KR1 87 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 AARDQ4LEZ3 155 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 LHFPL4Q7Z7J7 247 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 LINC00596Q86U02 117 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 OR52E5Q8NH55 327 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 SGK494Q96LW2 274 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 ZPBPQ9BS86 351 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 SERTAD4Q9NUC0 356 aa3.99□□□□□ -1.77
LIMA1-214ENST00000552783 ASH1LQ9NR48 2969 aaKnown RBP3.99□□□□□ -1.77
LIMA1-214ENST00000552783 OTOGLQ3ZCN5 2332 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms