RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 ZNF556Q9HAH1 456 aa4.42□□□□□ -1.7
VPS29-210ENST00000552130 SCN3BQ9NY72 215 aa4.42□□□□□ -1.7
VPS29-210ENST00000552130 IGHV3OR15-7A0A075B7D8 119 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 IGHV5-51A0A0C4DH38 117 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 LY6LH3BQJ8 138 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 IGKV1-5P01602 117 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 ZNF688P0C7X2 276 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 ZNF32P17041 273 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST1H2BOP23527 126 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST1H2BBP33778 126 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 CMC4P56277 68 aaPredicted RBP4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST1H2BDP58876 126 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST1H2BCP62807 126 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST2H2BEQ16778 126 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.41□□□□□ -1.7
VPS29-210ENST00000552130 TMEM14EPQ6UXP3 125 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 RPP25LQ8N5L8 163 aaKnown RBP4.41□□□□□ -1.7
VPS29-210ENST00000552130 PACRGLQ8N7B6 248 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 Q8N7P7 452 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 KLHL30-AS1Q8NEE0 82 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 OR4S1Q8NGB4 309 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST1H2BHQ93079 126 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 ZNF799Q96GE5 643 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST1H2BNQ99877 126 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 HIST1H2BMQ99879 126 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 SCN2AQ99250 2005 aa4.41□□□□□ -1.7
VPS29-210ENST00000552130 IGHV5-10-1A0A0J9YXX1 117 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 MEIS3P1A6NDR6 274 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 TMEM212A6NML5 194 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 A8MWL6 223 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 SRRM5B3KS81 715 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 NPFFO15130 113 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 OR2T1O43869 369 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 INSP01308 110 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 SDC2P34741 201 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 RAB5CP51148 216 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 CRISP3P54108 245 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 RBM11P57052 281 aaKnown RBP4.4□□□□□ -1.71
VPS29-210ENST00000552130 TAS2R45P59539 299 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 KRTAP10-5P60370 271 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 CCL20P78556 96 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 RPL22L1Q6P5R6 122 aaKnown RBP4.4□□□□□ -1.71
VPS29-210ENST00000552130 TMEM256Q8N2U0 113 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 RNF175Q8N4F7 328 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 PPTC7Q8NI37 304 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 DCANP1Q8TF63 244 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 TCEAL2Q9H3H9 227 aaPredicted RBP4.4□□□□□ -1.71
VPS29-210ENST00000552130 CBLN4Q9NTU7 201 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 BAIAP2Q9UQB8 552 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 MYH11P35749 1972 aa4.4□□□□□ -1.71
VPS29-210ENST00000552130 PRG4Q92954 1404 aaPredicted RBP4.39□□□□□ -1.71
VPS29-210ENST00000552130 RALGAPA2Q2PPJ7 1873 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 LOXHD1Q8IVV2 1947 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 IGLV11-55A0A075B6I3 123 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 IGHV3-49A0A0A0MS15 119 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 LOC100130705A0A1B0GUX0 176 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 A0A1B0GW54 56 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 IRGMA1A4Y4 181 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 GGT3PA6NGU5 568 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 GGTLC3B5MD39 225 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 M0R378 163 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 RBFOX2O43251 390 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS29-210ENST00000552130 APODP05090 189 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 IGHV1-8P0DP01 117 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 NDUFA6P56556 154 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 MSMO1Q15800 293 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 ZNF141Q15928 474 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 SP6Q3SY56 376 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 LUZP6Q538Z0 58 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 FAM78AQ5JUQ0 283 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 LDLRAD2Q5SZI1 272 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 BCL2L15Q5TBC7 163 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 SSX8Q7RTT4 187 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 SNX29P2Q8IUI4 249 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 MMGT1Q8N4V1 131 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 SUMF2Q8NBJ7 301 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 RNASE6Q93091 150 aaKnown RBP4.39□□□□□ -1.71
VPS29-210ENST00000552130 B9D2Q9BPU9 175 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 HDHD3Q9BSH5 251 aaPredicted RBP4.39□□□□□ -1.71
VPS29-210ENST00000552130 SHANK2-AS3Q9BTD1 123 aa4.39□□□□□ -1.71
VPS29-210ENST00000552130 IGHV3-43A0A0B4J1X8 118 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 TMEM218A2RU14 115 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 ZNF860A6NHJ4 632 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 C1orf196B1AJZ1 125 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 CCL25O15444 150 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 IGLV2-11P01706 119 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 IGLV3-25P01717 112 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 APCSP02743 223 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 PRM2P04554 102 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 ZNF728P0DKX0 622 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 LGALS3P17931 250 aaKnown RBP4.38□□□□□ -1.71
VPS29-210ENST00000552130 ATP6V0CP27449 155 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 TMBIM6P55061 237 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 LYZP61626 148 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 RPL30P62888 115 aaKnown RBP4.38□□□□□ -1.71
VPS29-210ENST00000552130 AADACL3Q5VUY0 350 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 MSRB3Q8IXL7 192 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 DAND5Q8N907 189 aa4.38□□□□□ -1.71
VPS29-210ENST00000552130 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.38□□□□□ -1.71
VPS29-210ENST00000552130 OR10G2Q8NGC3 310 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms