RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 IGKV1D-39P04432 117 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 ZNF182P17025 639 aaPredicted RBP12.25□□□□□ -0.45
VPS29-207ENST00000549970 GPR107Q5VW38 600 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 RBPMS2Q6ZRY4 209 aaKnown RBP12.25□□□□□ -0.45
VPS29-207ENST00000549970 H2BFWTQ7Z2G1 175 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 UBAC2Q8NBM4 344 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 SCARB1Q8WTV0 552 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 TMEM190Q8WZ59 177 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 MARC2Q969Z3 335 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 MRGPRFQ96AM1 343 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 BSCL2Q96G97 398 aaPredicted RBP12.25□□□□□ -0.45
VPS29-207ENST00000549970 SEC22AQ96IW7 307 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 C21orf62Q9NYP8 219 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 MRPL27Q9P0M9 148 aaKnown RBP12.25□□□□□ -0.45
VPS29-207ENST00000549970 EXTL2Q9UBQ6 330 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 KLK11Q9UBX7 282 aa12.25□□□□□ -0.45
VPS29-207ENST00000549970 K7EIM0 57 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 C8orf88P0DMB2 117 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 PGAM2P15259 253 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 PI3P19957 117 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 ELLP55199 621 aaPredicted RBP12.24□□□□□ -0.45
VPS29-207ENST00000549970 Q56UQ5 140 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 OR52I2Q8NH67 350 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 OR4A16Q8NH70 328 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 CHRDL1Q9BU40 450 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 GAR1Q9NY12 217 aaKnown RBP12.24□□□□□ -0.45
VPS29-207ENST00000549970 TENM2Q9NT68 2774 aa12.24□□□□□ -0.45
VPS29-207ENST00000549970 IGHV3OR16-8A0A075B7F1 116 aa12.23□□□□□ -0.45
VPS29-207ENST00000549970 F8W735 103 aaPredicted RBP12.23□□□□□ -0.45
VPS29-207ENST00000549970 ANKRD55Q3KP44 614 aa12.23□□□□□ -0.45
VPS29-207ENST00000549970 RNASE10Q5GAN6 216 aaKnown RBP12.23□□□□□ -0.45
VPS29-207ENST00000549970 SPSB3Q6PJ21 355 aa12.23□□□□□ -0.45
VPS29-207ENST00000549970 OR1L6Q8NGR2 347 aa12.23□□□□□ -0.45
VPS29-207ENST00000549970 C20orf24Q9BUV8 137 aa12.23□□□□□ -0.45
VPS29-207ENST00000549970 TRAV25A0A0B4J276 109 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 CD3DP04234 171 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 PPP5CP53041 499 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 PIGPP57054 158 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 LHFPL1Q86WI0 220 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 OR2C3Q8N628 320 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 OR1P1Q8NH06 330 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 MISP3Q96FF7 219 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 ABHD1Q96SE0 405 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 DAZ1Q9NQZ3 744 aaKnown RBP12.22□□□□□ -0.45
VPS29-207ENST00000549970 MTFP1Q9UDX5 166 aa12.22□□□□□ -0.45
VPS29-207ENST00000549970 NDUFA4O00483 81 aa12.21□□□□□ -0.45
VPS29-207ENST00000549970 ZNF207O43670 478 aaKnown RBP12.21□□□□□ -0.45
VPS29-207ENST00000549970 ADMP35318 185 aa12.21□□□□□ -0.45
VPS29-207ENST00000549970 RND3P61587 244 aa12.21□□□□□ -0.45
VPS29-207ENST00000549970 PRCDQ00LT1 54 aa12.21□□□□□ -0.45
VPS29-207ENST00000549970 IZUMO4Q1ZYL8 232 aa12.21□□□□□ -0.45
VPS29-207ENST00000549970 ARRDC1Q8N5I2 433 aa12.21□□□□□ -0.45
VPS29-207ENST00000549970 ZNF486Q96H40 463 aaPredicted RBP12.21□□□□□ -0.45
VPS29-207ENST00000549970 ATP6V0BQ99437 205 aa12.21□□□□□ -0.45
VPS29-207ENST00000549970 C5orf66Q9H5L9 145 aa12.21□□□□□ -0.45
VPS29-207ENST00000549970 DNAH1Q9P2D7 4330 aa12.2□□□□□ -0.46
VPS29-207ENST00000549970 RGS5O15539 181 aa12.2□□□□□ -0.46
VPS29-207ENST00000549970 HSPE1P61604 102 aaKnown RBP12.2□□□□□ -0.46
VPS29-207ENST00000549970 SPINK9Q5DT21 86 aa12.2□□□□□ -0.46
VPS29-207ENST00000549970 GPR141Q7Z602 305 aa12.2□□□□□ -0.46
VPS29-207ENST00000549970 OR4D10Q8NGI6 311 aa12.2□□□□□ -0.46
VPS29-207ENST00000549970 TP53RKQ96S44 253 aa12.2□□□□□ -0.46
VPS29-207ENST00000549970 GGTLC1Q9BX51 225 aa12.2□□□□□ -0.46
VPS29-207ENST00000549970 MRPS26Q9BYN8 205 aaKnown RBP12.2□□□□□ -0.46
VPS29-207ENST00000549970 UBQLN2Q9UHD9 624 aa12.2□□□□□ -0.46
VPS29-207ENST00000549970 LOC102724200A0A096LPH7 203 aaPredicted RBP12.19□□□□□ -0.46
VPS29-207ENST00000549970 I3L2K1 104 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 NUPL2O15504 423 aaKnown RBP12.19□□□□□ -0.46
VPS29-207ENST00000549970 MT-CO2P00403 227 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 IGHV3-48P01763 117 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 TBPP20226 339 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 AKR1C2P52895 323 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 ERHP84090 104 aaKnown RBP12.19□□□□□ -0.46
VPS29-207ENST00000549970 SCGB2B2Q4G0G5 96 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 ZNF114Q8NC26 417 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 C15orf40Q8WUR7 153 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 PINX1Q96BK5 328 aaKnown RBP12.19□□□□□ -0.46
VPS29-207ENST00000549970 SPAG8Q99932 426 aaPredicted RBP12.19□□□□□ -0.46
VPS29-207ENST00000549970 MIXL1Q9H2W2 232 aa12.19□□□□□ -0.46
VPS29-207ENST00000549970 TSPAN4O14817 238 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 RAB3DO95716 219 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 IGKV1-5P01602 117 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 CTSGP08311 255 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 ALDH3B2P48448 385 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 MFAP4P55083 255 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 TAS2R19P59542 299 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 RELQ04864 619 aaPredicted RBP12.18□□□□□ -0.46
VPS29-207ENST00000549970 SPCS2Q15005 226 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 LAMTOR1Q6IAA8 161 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 TMEM229BQ8NBD8 167 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 COPZ2Q9P299 210 aa12.18□□□□□ -0.46
VPS29-207ENST00000549970 LCE6AA0A183 80 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 C3orf85A0A1B0GTC6 90 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 C15orf62A8K5M9 175 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 GABARAPH6UMI1 98 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 K7EMT4 169 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 CTDSP2O14595 271 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 YIF1AO95070 293 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 CD74P04233 296 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 TRIM16LQ309B1 348 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms