RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 CMTM3Q96MX0 182 aa9.2□□□□□ -0.94
SCAF11-208ENST00000546534 SCRT1Q9BWW7 348 aa9.2□□□□□ -0.94
SCAF11-208ENST00000546534 X6R8D5 127 aa9.2□□□□□ -0.94
SCAF11-208ENST00000546534 DEFB131BA0A096LNP1 70 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 K7EIM0 57 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 NUPL2O15504 423 aaKnown RBP9.19□□□□□ -0.94
SCAF11-208ENST00000546534 YIF1AO95070 293 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 TRAPPC2P0DI81 140 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 TRAPPC2BP0DI82 140 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 PAFAH1B2P68402 229 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 POU2AF1Q16633 256 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 CDNFQ49AH0 187 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 CNIH2Q6PI25 160 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 Q6ZR54 194 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 ZNF767PQ75MW2 155 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 TCF24Q7RTU0 167 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 OR10C1Q96KK4 312 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 CCL28Q9NRJ3 127 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 CELA1Q9UNI1 258 aa9.19□□□□□ -0.94
SCAF11-208ENST00000546534 F11RQ9Y624 299 aaKnown RBP9.19□□□□□ -0.94
SCAF11-208ENST00000546534 IGLV2-18A0A075B6J9 118 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 TEX50A0A1B0GTY4 177 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 SCO2A0A1W2PP80 73 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 METTL21EPA6NDL7 271 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 ZNF705EA8MWA4 302 aaPredicted RBP9.18□□□□□ -0.94
SCAF11-208ENST00000546534 PTGES3LE9PB15 166 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 RBFOX2O43251 390 aaKnown RBP eCLIP9.18□□□□□ -0.94
SCAF11-208ENST00000546534 NQO2P16083 231 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 OR10A3P58181 314 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 TAS2R31P59538 309 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 FABP5Q01469 135 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 C12orf74Q32Q52 190 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 ANKRD39Q53RE8 183 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 THOC7Q6I9Y2 204 aaKnown RBP9.18□□□□□ -0.94
SCAF11-208ENST00000546534 ZNF773Q6PK81 442 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 STHQ8IWL8 128 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 FAM24BQ8N5W8 94 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 MAPKAPK5-AS1Q8N8E1 139 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 GIMAP1Q8WWP7 306 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 DGCR14Q96DF8 476 aaKnown RBP9.18□□□□□ -0.94
SCAF11-208ENST00000546534 NDUFAF3Q9BU61 184 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 DCSTAMPQ9H295 470 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 TMEM140Q9NV12 185 aa9.18□□□□□ -0.94
SCAF11-208ENST00000546534 TRAV14DV4A0A0A6YYC5 116 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 IFITM5A6NNB3 132 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 DNASE2O00115 360 aaPredicted RBP9.17□□□□□ -0.94
SCAF11-208ENST00000546534 SULT1C2O00338 296 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 DFFBO76075 338 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 HPRT1P00492 218 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 FGF2P09038 288 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 HSMCR30P0CW71 290 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 RELQ04864 619 aaPredicted RBP9.17□□□□□ -0.94
SCAF11-208ENST00000546534 ARL6IP1Q15041 203 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 TRAM1Q15629 374 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 HACD4Q5VWC8 232 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 HSD17B13Q7Z5P4 300 aaPredicted RBP9.17□□□□□ -0.94
SCAF11-208ENST00000546534 LILRB2Q8N423 598 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 PACRGLQ8N7B6 248 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 NUDCD2Q8WVJ2 157 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 SECTM1Q8WVN6 248 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 HINT2Q9BX68 163 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 ATG5Q9H1Y0 275 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 MS4A6AQ9H2W1 248 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 NDUFA4L2Q9NRX3 87 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 HSPG2P98160 4391 aa9.17□□□□□ -0.94
SCAF11-208ENST00000546534 H3BS24 57 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 CDK2AP2O75956 126 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 IFNA10P01566 189 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 C4BPBP20851 252 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 PSMA1P25786 263 aaKnown RBP9.16□□□□□ -0.94
SCAF11-208ENST00000546534 MSMO1Q15800 293 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 TMEM41BQ5BJD5 291 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 TRPT1Q86TN4 253 aaKnown RBP9.16□□□□□ -0.94
SCAF11-208ENST00000546534 DMBX1Q8NFW5 382 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 OR1L8Q8NGR8 309 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 ST8SIA2Q92186 375 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 PRR13Q9NZ81 148 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 ANXA10Q9UJ72 324 aa9.16□□□□□ -0.94
SCAF11-208ENST00000546534 TMEM235A6NFC5 223 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 PDCD5O14737 125 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 ST8SIA3O43173 380 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 SSX5O60225 188 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 APOHP02749 345 aaPredicted RBP9.15□□□□□ -0.94
SCAF11-208ENST00000546534 CD5P06127 495 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 PTHLHP12272 177 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 SOHLH1Q5JUK2 328 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 LSM10Q969L4 123 aaKnown RBP9.15□□□□□ -0.94
SCAF11-208ENST00000546534 NXF2Q9GZY0 626 aaKnown RBP9.15□□□□□ -0.94
SCAF11-208ENST00000546534 VSIRQ9H7M9 311 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 PLEKHA2Q9HB19 425 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 C8orf4Q9NR00 106 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 CLEC5AQ9NY25 188 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 TBC1D24Q9ULP9 559 aa9.15□□□□□ -0.94
SCAF11-208ENST00000546534 TRAV2A0A0B4J234 112 aa9.14□□□□□ -0.95
SCAF11-208ENST00000546534 IGHV3-66A0A0C4DH42 116 aa9.14□□□□□ -0.95
SCAF11-208ENST00000546534 IFNA21P01568 189 aa9.14□□□□□ -0.95
SCAF11-208ENST00000546534 IFNA17P01571 189 aa9.14□□□□□ -0.95
SCAF11-208ENST00000546534 CD74P04233 296 aa9.14□□□□□ -0.95
SCAF11-208ENST00000546534 SPP1P10451 314 aa9.14□□□□□ -0.95
SCAF11-208ENST00000546534 FCGR2CP31995 323 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms