RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	DEFA4	P12838	97 aa		10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	OR10J1	P30954	320 aa		10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	COMP	P49747	757 aa	Predicted RBP	10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	SST	P61278	116 aa		10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	VMA21	Q3ZAQ7	101 aa		10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	C1orf229	Q6ZS94	237 aa	Predicted RBP	10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	TCF23	Q7RTU1	214 aa		10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	FAM216B	Q8N7L0	139 aa		10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	DNAJC4	Q9NNZ3	241 aa		10.64	□□□□□ -0.71
CPSF7-223	ENST00000544669	TRBV20OR9-2	A0A075B6H5	130 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	OR7C2	O60412	319 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	BMP5	P22003	454 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	ZNF137P	P52743	207 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669		Q0VG73	95 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	CLEC12B	Q2HXU8	276 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	SPRN	Q5BIV9	151 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	RASL11A	Q6T310	242 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	LINC00469	Q8N7U9	141 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	OR10X1	Q8NGY0	326 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	C22orf15	Q8WYQ4	148 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	SLC25A33	Q9BSK2	321 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	SAP30L	Q9HAJ7	183 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	KAAG1	Q9UBP8	84 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	WASHC3	Q9Y3C0	194 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	ZNF705G	A8MUZ8	300 aa	Predicted RBP	10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669		A8MWP6	167 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669		H0YJW9	148 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	SELL	P14151	372 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	CRISP2	P16562	243 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	LGALS4	P56470	323 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	FAM201A	Q5SY85	155 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	MIR17HG	Q75NE6	70 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	MMD2	Q8IY49	270 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	OR9G1	Q8NH87	305 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	SMIM12	Q96EX1	92 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	C14orf144	Q96I85	54 aa		10.63	□□□□□ -0.71
CPSF7-223	ENST00000544669	TRBV23-1	A0A0A0MS06	115 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	TMEM178B	H3BS89	294 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	CORT	O00230	105 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	PPOX	P50336	477 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	ADIPOQ	Q15848	244 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	MRPL52	Q86TS9	123 aa	Known RBP	10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	ZNF114	Q8NC26	417 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	CMTM2	Q8TAZ6	248 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	MS4A10	Q96PG2	267 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	NDUFAF3	Q9BU61	184 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	USF3	Q68DE3	2245 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	PTPRB	P23467	1997 aa		10.62	□□□□□ -0.71
CPSF7-223	ENST00000544669	CHD3	Q12873	2000 aa	Known RBP	10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	IGKV1-16	P04430	117 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	RAB4B	P61018	213 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	TMEM200B	Q69YZ2	307 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	MRPL18	Q9H0U6	180 aa	Known RBP	10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	ZNF430	Q9H8G1	570 aa	Predicted RBP	10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	CDC42EP3	Q9UKI2	254 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	SSUH2	Q9Y2M2	353 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	SRRM4	A7MD48	611 aa	Known RBP	10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	FCN1	O00602	326 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	COX7A2P2	O60397	106 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	FOXH1	O75593	365 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	ACTL6B	O94805	426 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	FSTL3	O95633	263 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	CX3CL1	P78423	397 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	CCL8	P80075	99 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	RBPJ	Q06330	500 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	CENPW	Q5EE01	88 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	OR10J3	Q5JRS4	329 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	SPATA31B1P	Q5VZV4	182 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	OR1L6	Q8NGR2	347 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	MRPL20	Q9BYC9	149 aa	Known RBP	10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	TMEM106B	Q9NUM4	274 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	JKAMP	Q9P055	326 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669		V9GYV3	84 aa		10.61	□□□□□ -0.71
CPSF7-223	ENST00000544669	SPEG	Q15772	3267 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	GPR179	Q6PRD1	2367 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	TCRBV4S1A1T	A0A5B7	111 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	KLK10	O43240	276 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	SCGB1D1	O95968	90 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	HLA-DQA1	P01909	254 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	CRYBB3	P26998	211 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	C10orf113	Q5VZT2	155 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	DOLPP1	Q86YN1	238 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	WFDC8	Q8IUA0	241 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	TGIF2LX	Q8IUE1	241 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	TEX45	Q8NA69	505 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	THAP8	Q8NA92	274 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	C2orf88	Q9BSF0	95 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	FAM186A	A6NE01	2351 aa		10.6	□□□□□ -0.71
CPSF7-223	ENST00000544669	PGPEP1L	A6NFU8	196 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669		K7EN84	100 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	MMP23A	O75900	390 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	RD3L	P0DJH9	198 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	ADM	P35318	185 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	PRRX1	P54821	245 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	SUMO1	P63165	101 aa	Known RBP	10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	FAM231D	Q6ZW35	169 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	ZNF664	Q8N3J9	261 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	RPRML	Q8N4K4	120 aa		10.59	□□□□□ -0.71
CPSF7-223	ENST00000544669	RBM14	Q96PK6	669 aa	Known RBP	10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms