RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TMEM54Q969K7 222 aa11.96□□□□□ -0.49
LIMS1-215ENST00000544547 F2Z2F3 143 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 PRRX1P54821 245 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 FBXW9Q5XUX1 488 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 FGFBP3Q8TAT2 258 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 PAXXQ9BUH6 204 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 CCL25O15444 150 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 ZNF114Q8NC26 417 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 OR4F17Q8NGA8 305 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 ADTRPQ96IZ2 230 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 TCF19Q9Y242 345 aa11.96□□□□□ -0.5
LIMS1-215ENST00000544547 PI4KAP42356 2102 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 CIDEAO60543 219 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 IGFBP2P18065 325 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 GFRA1P56159 465 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 PLPPR1Q8TBJ4 325 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 RND1Q92730 232 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 HS3ST6Q96QI5 342 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 ZNF703Q9H7S9 590 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-215ENST00000544547 THYN1Q9P016 225 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 hDV102S1A0JD36 115 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 TDGF1P13385 188 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 ANOS1P23352 680 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 LHX2P50458 406 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 PMS2CLQ68D20 193 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 BHLHA15Q7RTS1 189 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-215ENST00000544547 A8MWL6 223 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 SELENOTP62341 195 aa11.95□□□□□ -0.5
LIMS1-215ENST00000544547 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.94□□□□□ -0.5
LIMS1-215ENST00000544547 RBFOX2O43251 390 aaKnown RBP eCLIP11.94□□□□□ -0.5
LIMS1-215ENST00000544547 GOSR1O95249 250 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 IGLC2P0DOY2 106 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 IGLC3P0DOY3 106 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 CEACAM3P40198 252 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 C10orf113Q5VZT2 155 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 VSTM2AQ8TAG5 236 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 CTSSP25774 331 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 LINC00596Q86U02 117 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 RAB1BQ9H0U4 201 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 PGPA6NDG6 321 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 LINC00205P59089 165 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 SMAGPQ0VAQ4 97 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 TNXAQ16473 311 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 CLEC7AQ9BXN2 247 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 CST9LQ9H4G1 147 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 KIR2DL5BA0A0G2JN68 375 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 KIR2DL5BA0A0G2JPC4 375 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 GAGE12BA1L429 117 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 C7orf71A4D174 169 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 ITGB1BP1O14713 200 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 TMEM177Q53S58 311 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 SPATA31B1PQ5VZV4 182 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 KIR2DL5AQ8N109 375 aa11.94□□□□□ -0.5
LIMS1-215ENST00000544547 NCOA6Q14686 2063 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-215ENST00000544547 A0A087X0K7 114 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 C12orf77C9JDV5 145 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 WNT9BO14905 357 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 SMIM17P0DL12 118 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 SAMD13Q5VXD3 122 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 PET117Q6UWS5 81 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 ZNF441Q8N8Z8 693 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 NFAM1Q8NET5 270 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-215ENST00000544547 GNB1LQ9BYB4 327 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 MUC21A0A0G2JKD1 596 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 MUC21A0A140T8X8 626 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 OR2T8A6NH00 312 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 TFF1P04155 84 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 PLA2G5P39877 138 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 OCIAD2Q56VL3 154 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 MUC21Q5SSG8 566 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 MDP1Q86V88 176 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 DCTN5Q9BTE1 182 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 RNF115Q9Y4L5 304 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 IGHV3OR15-7A0A075B7D8 119 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 TMEM116Q8NCL8 245 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 OR51B2Q9Y5P1 312 aa11.93□□□□□ -0.5
LIMS1-215ENST00000544547 CHCHD2Q9Y6H1 151 aaPredicted RBP11.93□□□□□ -0.5
LIMS1-215ENST00000544547 TRAV24A0A0B4J272 114 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 GUCD1Q96NT3 240 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 SCRT1Q9BWW7 348 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 RNF7Q9UBF6 113 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 HIGD1CA8MV81 97 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 LYPD6Q86Y78 171 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 OR5P3Q8WZ94 311 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 COLQQ9Y215 455 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-215ENST00000544547 C8orf88P0DMB2 117 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 GPR183P32249 361 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 COA6Q5JTJ3 125 aaKnown RBP11.92□□□□□ -0.5
LIMS1-215ENST00000544547 C1orf185Q5T7R7 199 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 INO80CQ6PI98 192 aaPredicted RBP11.92□□□□□ -0.5
LIMS1-215ENST00000544547 C20orf204Q6ZNR8 217 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 PRNTQ86SH4 94 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 SPCS1Q9Y6A9 102 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 TRAV30A0A087WSZ9 112 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 PRDM14Q9GZV8 571 aa11.92□□□□□ -0.5
LIMS1-215ENST00000544547 A0A1W2PS18 150 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 KIR2DS2P43631 304 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 LYZP61626 148 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 RPL39P5Q59GN2 51 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 TMEM97Q5BJF2 176 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms