RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 OR4C13Q8NGP0 309 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 OR9G1Q8NH87 305 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 ABHD5Q8WTS1 349 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 LY96Q9Y6Y9 160 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 AREGP15514 252 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 CHRNB4P30926 498 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 CEBPGP53567 150 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 PAX2Q02962 417 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 KLRB1Q12918 225 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 ST6GALNAC6Q969X2 333 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 PARLQ9H300 379 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 FREM2Q5SZK8 3169 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 IGHV1-69-2A0A0G2JMI3 117 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 TEX50A0A1B0GTY4 177 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 DVL1O14640 695 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 MMP23AO75900 390 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 CA2P00918 260 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 LOXP28300 417 aaPredicted RBP8.04□□□□□ -1.12
SS18-205ENST00000542420 SRP14P37108 136 aaKnown RBP8.04□□□□□ -1.12
SS18-205ENST00000542420 LGALS7P47929 136 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 ERVFRD-1P60508 538 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 RPL23P62829 140 aaKnown RBP8.04□□□□□ -1.12
SS18-205ENST00000542420 RBX1P62877 108 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 SPINK9Q5DT21 86 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 ARSJQ5FYB0 599 aaPredicted RBP8.04□□□□□ -1.12
SS18-205ENST00000542420 ZNF343Q6P1L6 599 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 ABHD12Q8N2K0 398 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 OR4F5Q8NH21 305 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 SVIPQ8NHG7 77 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 C8orf46Q8TAG6 207 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 FLYWCH2Q96CP2 140 aaKnown RBP8.04□□□□□ -1.12
SS18-205ENST00000542420 OR4F4Q96R69 305 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 NABP2Q9BQ15 211 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 WASHC3Q9Y3C0 194 aa8.04□□□□□ -1.12
SS18-205ENST00000542420 C11orf94C9JXX5 98 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 TRGC2P03986 189 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 ERHP84090 104 aaKnown RBP8.03□□□□□ -1.12
SS18-205ENST00000542420 VKORC1L1Q8N0U8 176 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 TMEM190Q8WZ59 177 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 LEAP2Q969E1 77 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 C11orf52Q96A22 123 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 PLPPR2Q96GM1 343 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 NDUFA4L2Q9NRX3 87 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 ARFGEF3Q5TH69 2177 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 DLL1O00548 723 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 PAGE4O60829 102 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 C1QTNF9P0C862 333 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 TRGC1P0CF51 173 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 SAA1P0DJI8 122 aaPredicted RBP8.03□□□□□ -1.12
SS18-205ENST00000542420 SUB1P53999 127 aaKnown RBP eCLIP8.03□□□□□ -1.12
SS18-205ENST00000542420 RPL8P62917 257 aaKnown RBP8.03□□□□□ -1.12
SS18-205ENST00000542420 PVRIGQ6DKI7 326 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 FRZBQ92765 325 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 FAM210BQ96KR6 192 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 HARBI1Q96MB7 349 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 RNF5Q99942 180 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 MRPL32Q9BYC8 188 aaKnown RBP8.03□□□□□ -1.12
SS18-205ENST00000542420 MRPL20Q9BYC9 149 aaKnown RBP8.03□□□□□ -1.12
SS18-205ENST00000542420 SRD5A3Q9H8P0 318 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 TMEM167BQ9NRX6 74 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 SLC45A2Q9UMX9 530 aa8.03□□□□□ -1.12
SS18-205ENST00000542420 TRAV9-1A0A075B6T8 112 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 ATXN7O15265 892 aaPredicted RBP8.02□□□□□ -1.13
SS18-205ENST00000542420 PFN1P07737 140 aaKnown RBP8.02□□□□□ -1.13
SS18-205ENST00000542420 RNASE2P10153 161 aaKnown RBP8.02□□□□□ -1.13
SS18-205ENST00000542420 CD69Q07108 199 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 ZNF674Q2M3X9 581 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 HLA-DRB5Q30154 266 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 VMA21Q3ZAQ7 101 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 STPG3Q8N7X2 389 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 TEX45Q8NA69 505 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 C1orf159Q96HA4 380 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 OR5B12Q96R08 314 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 COMMD5Q9GZQ3 224 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 WDFY4Q6ZS81 3184 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.02□□□□□ -1.13
SS18-205ENST00000542420 H7BYZ3 331 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 TYMSP04818 313 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 IGHV1-8P0DP01 117 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 COMPP49747 757 aaPredicted RBP8.02□□□□□ -1.13
SS18-205ENST00000542420 LCN2P80188 198 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 UTF1Q5T230 341 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 ZNF114Q8NC26 417 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 OR10X1Q8NGY0 326 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 TMEM133Q9H2Q1 129 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 CTSZQ9UBR2 303 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 RALYQ9UKM9 306 aaKnown RBP8.02□□□□□ -1.13
SS18-205ENST00000542420 AMMECR1Q9Y4X0 333 aaPredicted RBP8.02□□□□□ -1.13
SS18-205ENST00000542420 GVINP1Q7Z2Y8 2422 aa8.02□□□□□ -1.13
SS18-205ENST00000542420 TGIF2-C20orf24A0A0A6YYL0 155 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 A6NNC1 897 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 SRRM4A7MD48 611 aaKnown RBP8.01□□□□□ -1.13
SS18-205ENST00000542420 C9JCJ5 164 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 M0R143 59 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 FCN3O75636 299 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 AMBPP02760 352 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 GCHFRP30047 84 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 PRRX1P54821 245 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 TAS2R45P59539 299 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 ADIRFQ15847 76 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms